Query= MSMg01no098_d05.b1 MSMg01no098_d05.b1 CHROMAT_FILE:
MSMg01no098_d05.b1 PHD_FILE: MSMg01no098_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
(450 letters)
>mm_chr3_96288368_96289217
Length = 850
Score = 748 bits (387), Expect = 0.0
Identities = 399/403 (99%)
Strand = Plus / Minus
Query: 1 cagggcttgaacttttggtcaatccccaagcttcgaagtagctgggactaaggacagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cagggcttgaacttttggtcaatccccaagcttcgaagtagctgggactaaggacagaag 344
Query: 61 tgacaggtcaagctcccaccaccgttgtaattttttaagttaacagtagttttagctgta 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 tgacaggtcaagctcccaccaccgttgtaattttttaagttaacagtggttttagctgta 284
Query: 121 acgacacatatggaataggcactcctcatgttcttctcttcctcattatagatctggaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acgacacatatggaataggcactcctcatgttcttctcttcctcattatagatctggaac 224
Query: 181 cactgttaccaaagcccaacacccagggttacactgtagacctgactccttgttttcaaa 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 cactgttaccaaagcccgacacccagggttacactgtagacctgactccttgttttcaaa 164
Query: 241 agggttctcactatgcagccttggctggccttgaactcacacagatctgattccctttgc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agggttctcactatgtagccttggctggccttgaactcacacagatctgattccctttgc 104
Query: 301 ttcctgagtgatgggattaagagtatgtactaccataacgcgccttatttttagatttac 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 103 ttcctgagtgatgggattaagagtatgtactaccataacgggccttatttttagatttac 44
Query: 361 tttttctcatttgcaactgtgtgttttgcctgcatttatgtat 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 tttttctcatttgcaactgtgtgttttgcctgcatttatgtat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_d05.g1 MSMg01no098_d05.g1 CHROMAT_FILE:
MSMg01no098_d05.g1 PHD_FILE: MSMg01no098_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
(527 letters)
>mm_chr3_96187200_96188124
Length = 925
Score = 920 bits (476), Expect = 0.0
Identities = 521/554 (94%), Gaps = 29/554 (5%)
Strand = Plus / Plus
Query: 1 ctggtcagcctaacttatataaggaggaggtcagcctaatttatatagcgatctctagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ctggtcagcctaacttatataaggaggaggtcagcctaatttatatagcgatctctagcc 233
Query: 61 cagctatataaatagtgagaccctgtctcacaaaaaaaaaa------------------- 101
|||||||||||||||||||||||||||| | ||||||||||
Sbjct: 234 cagctatataaatagtgagaccctgtcttaaaaaaaaaaaaaaaaaagaaaaagaaaaaa 293
Query: 102 --------aataaaaaaaaagcaatcaaaaaacggttttcacccctagggatcctgcctg 153
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 agaaaaagaaaaaaaaaaaagcaatcaaaaaacggttttcacccctagggatcctgcctg 353
Query: 154 aggtttctcagtatcgctgcactgcagcatttgagtaagaagtcaggtttccaacgactc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aggtttctcagtatcgctgcactgcagcatttgagtaagaagtcaggtttccaacgactc 413
Query: 214 accagcgaacattccttttgtgggaagaccactgcttacttaatttgaggcttctgcgaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 accagcgaacattccttttgtgggaagaccactgcttacttaatttgaggcttctgcgaa 473
Query: 274 gactaggtttcatcaagaaattctctaataaggagcaaaagagacggctcagaatgagag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gactaggtttcatcaagaaattctctaataaggagcaaaagagacggctcagaatgagag 533
Query: 334 ctcttccaagaatccaggtgtgactcccaacaaccacacaagaactgtcttccgatcttt 393
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ctcttcgaagaatccaggtgtgactcccaacaaccacacaagaactgtcttccgatcttt 593
Query: 394 gctctcccggtgggtccgcgcagcgtcccaaacagaggcaggggagataaacaaaaccct 453
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctc--ccggtgggtccgcgcagcgtcccaaacagaggcaggggagataaacaaaaccct 651
Query: 454 tacaaactcttaccaatgatttccctcttgggtattttttggtaacaaattataaggaaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tacaaactcttaccaatgatttccctcttgggtattttttggtaacaaattataaggaaa 711
Query: 514 aagtgcgaacgcag 527
||||||||||||||
Sbjct: 712 aagtgcgaacgcag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 925
Length adjustment: 10
Effective length of query: 517
Effective length of database: 915
Effective search space: 473055
Effective search space used: 473055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
