Query= MSMg01no098_d08.b1 MSMg01no098_d08.b1 CHROMAT_FILE:
MSMg01no098_d08.b1 PHD_FILE: MSMg01no098_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
(647 letters)
>mm_chr3_123600210_123601257
Length = 1048
Score = 1040 bits (538), Expect = 0.0
Identities = 616/642 (95%), Gaps = 1/642 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgctgcg-atatactctgaaataagctctaattaatacaatattctcctgca 63
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgctgtgcatatactctgaaataagctctaattaatacaatattctcctgca 264
Query: 64 tatatgatttttatgacagtaggtcaggacaggtaattttatttctcatataccccctca 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tatatgatttttatgacagtagatcaggacaggtaattttatttctcatatactccctca 324
Query: 124 actcagttgacattgactgtttcagtgaatctcctcccaaatatgccctggcaatgaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcagttgacattgactgtttcagtgaatctcctcccaaatatgccctggcaatgaaaa 384
Query: 184 cacaactcagttaatatgaatacatgctgtttgcctagattgggcagatctactgctata 243
||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
Sbjct: 385 cacaactcagttaatatgaatccatgctgtgcgcctagattgggcagatctaccgctaca 444
Query: 244 ctaccgtcttccacatctatgagaccccttataatgtgcggattctccaggctatgtgct 303
||||| || |||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct: 445 ctaccatcctccacatctatgagaccccttagaacatgcggattctccaggccatgtgct 504
Query: 304 tctgctccatttttcttcttcctcctcctcttcgtcctctccgtcttccattttttcctt 363
|||| |||| ||||||| ||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 505 tctgttccacctttcttcctcctcctcctctttgtcctctctgacttccattttttcctt 564
Query: 364 cttctctccctcatcttctgctccaccttcccttttatctgcctaatcatcagctctcct 423
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctctcccccatcttctgctccatcttcccttttatctgcctaatcatcagctctcct 624
Query: 424 ttattttacaaattaaggtggaaagcaggtttacaggaaatcacctgagtcctgactcat 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttattttacaaattaaggtggaaagcaggttttcaggaaatcacctgagtcctgactcat 684
Query: 484 tccttgtttgggttggcaaccatttccaggagaatggaattaacataaaatataattagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccttgtttgggttggcaaccatttccaggagaatggaattaacataaaatataattagc 744
Query: 544 cccagggctatccacaacaccttcttccacatctatgagaccccttataacctgtggttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccagggctatccacaacaccttcttccacatctatgagaccccttataacctgtggttt 804
Query: 604 ctccaggccatgtgcttatgctctgcttttcctcctccccct 645
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 805 ctccaggccatgtgcttatgctctgcttttccccctccccct 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 647
Length of database: 1048
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1038
Effective search space: 661206
Effective search space used: 661206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_d08.g1 MSMg01no098_d08.g1 CHROMAT_FILE:
MSMg01no098_d08.g1 PHD_FILE: MSMg01no098_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:14 2005
(621 letters)
>mm_chr3_123707797_123708817
Length = 1021
Score = 1033 bits (534), Expect = 0.0
Identities = 598/620 (96%), Gaps = 5/620 (0%)
Strand = Plus / Minus
Query: 1 aggtttttcttttattttattcaacatatttttattgattattcaggaattttgcataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggtttttcttttattttattcaacatatttttattgattattcaggaattttgcataat 558
Query: 61 gcaccccaatcacactaacagaagaaa-aactctgtcagtgctgtcctctgaggaaaatg 119
||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct: 557 gcaccccaatcacactaacggaagaaacaa--ctgtcagtgctgtcctctgaggaaaata 500
Query: 120 tggatggctttgctagatatcacagtaaggagattagctatatatggaaacacatatgtc 179
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 tggatggctttcctagatatcacaataaggagattagctatatatggaaacacatatgtc 440
Query: 180 ccggtgttccttttattaaggaatataaacaaatgaacaaattctagaaacagagtaaag 239
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccagtgttccttttactaaggaatataaacaaatgaacaaattctagaaacagagtaaag 380
Query: 240 ccaggggctcttaatcggggacaggaagccaggagccccaagccagaccgtttgggaact 299
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggggctcttgttcggggacaggaagccaggagccccaagccagaccgtttgggaact 320
Query: 300 gccacacaaaatctagggaccacagtaatatagcacacttgaaagttgatgagacaggag 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gccacacacaatctagggaccacagtaatatagcacacttgaaagttgatgagacaggag 260
Query: 360 atctcaaatgttctaagcactcaaaggggtaactccctacgttgctgaatgtgatttaag 419
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 259 atctcaaatgttctaagcactcaaaggggtaactccctatgttgcttaatgtgatttaag 200
Query: 420 tacccaattcaacttatgcatttttaaaatatactttagataccagagatacaaatactt 479
|||||| |||||||||||||||| ||||| || |||||||| |||||||||||||||||
Sbjct: 199 tacccacttcaacttatgcattta-aaaatgtaatttagatatcagagatacaaatactt 141
Query: 480 atggatagttttatttgccttttatacttcaataaggaagccagaaaaaaa-gtgatgag 538
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 140 acggatagttttatttgccttttatacttcaataaggaagccagaaaaaaaagtgatgag 81
Query: 539 gagagaaattttcttcatctaccaaaagcacattcttaacaaccgcttgtgttttagaag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 gagagaaattttcttcatctaccaaaagcacattcttaacaaccgcttgtgttttagaag 21
Query: 599 aaaattgaagatttatagcc 618
||||||||||||||||||||
Sbjct: 20 aaaattgaagatttatagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
