BAC Information

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BAC

Clone NameMSMg01-098D23
Chromosome3 (Build37)
Map Location 40,902,844 - 40,903,222
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098D23.T7 (MSMg01no098_d23.b1)MSMg01-098D23.TJ (MSMg01no098_d23.g1)
ACCAG314478AG314479
length796785
length of high quality
(start - end)
501 (108 - 608)381 (126 - 506)
definitionCHROMAT_FILE: MSMg01no098_d23.b1 PHD_FILE: MSMg01no098_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005CHROMAT_FILE: MSMg01no098_d23.g1 PHD_FILE: MSMg01no098_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNNNNNCCCCNCCCCCCCNNNNCCCCTCCCCCCCCCCNNCCCCCC
CCTCTCTATNTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACTTTGTACACCAGGCTGGCCTCAAACTCAGAG
GCTGGCCTGCCTCAGCCTCCACCTCCCAAATGCTGGGATTAAAGGTATAG
CCCAGCTTTATTAAAAATATAAATGTTAGCCAGCCATAGTGTTTTATGCC
TCTAATCCCAGCATTTAGGAGGCAGTGGCTGACAGATCTCTAAGTTCCAG
GCCAGTCTGGTCTACAAAGTGAGTTCTAGGACAGCTGGGGCTACACAGAG
AAACCCTGTCTAAAAAAGAAACATCAATACACTTTATGGGTTGGAGAGAT
GACTCAGCAATTAAGAGCACTAAGTACTCTTCCAGAGAACCCAGGTTCAA
ATCCCTGCACCTACATGGCAGCTTATAACTGTAACTCCAAGGTCTGACAT
GTTCACACAGGTATACATGCATAGAAAGCACCAATGCACATAAAATAAAA
AATATTTGGATAGAGAGATGGCTCAAGCGGTTAAGGGCACTGGCTGCTCT
TCCAGAGGTCCTGAGTTCAATTCCAAGCAACCACATGGCAGATTATAATT
ATTGATAATGAATCCCGATGCCCTCTTCTGATATGCATCCGTACGTGCAG
ATAGAGCCCTCCCAACATAAACAGAATCCTTCAATAAACACACCGAACTT
TTTTTAAAATGTTAATGTCTTGAATGAAACACTTTTCCATTTTATT
NNNNNNNNNNNNNNNNNCCCCNNGGCCTCCCCCCCCCCATCTTATATTTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTTTTAATTCATTATTAGTGG
TGTGTGTGTGTGTGTGTGTGCGCAGATACATGCTCACATGAAGGCCAAAG
GGCAACTTTGGGGTTTTTGCTCCCAATTCCATAGCATGGTCTTCAGATAC
CAAAACTTCTTGCTAAATACAGTCTGAAATCATCTGCAGGATGCTGTGGC
CAGCATCTCCATTCAGCCTCAACTCTCTGTCTCTGTCTGTCTGTCTGTCT
ATCTGTCTATTTATCTATCTATCTCTATTTCTCTGTAGAACAAGCTAATC
TAGAACTCACTATGTAGCCCAAGCTAGCTTCAAACCCTTCATCCTCTGGT
TTGAGTCTCCCAGGTGCTGTAGTGTGTCTCCATGCCTAGTGCTCAATGCT
CTTTACCAGCTAGCTCTCAACAAGGACTGGATATCTTTTGAAAACAATGT
CCAAAGAATATTTATCTTTAAAACCCCACGCCCAGAAGAGTGACTGGCTA
GGAGTAAGAAGATATAGTATAATGGGGGCTGGAGAGCTTGAAGACCTATT
GGTTAACAGAATGAATTGCTTTTATAGATGACCTGAATTCACTTCCTAAC
ACCCTAGTTGGTCAGCTCATATACCCCTGTAACTTCCTTCTCCACGGTTA
TTTAAACACCTCTCTCCGGTTTCCTGAAGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_d23.g1 MSMg01no098_d23.g1 CHROMAT_FILE:
MSMg01no098_d23.g1 PHD_FILE: MSMg01no098_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:17 2005
         (381 letters)



>mm_chr3_40902774_40903554
          Length = 781

 Score =  710 bits (367), Expect = 0.0
 Identities = 377/381 (98%), Gaps = 2/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttttttaattcattattagtggtgtgtgtgtgtgtgtgtgtgcgcagatacatgctc 60
           ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 449 tgtttttttaattcattattagtg--gtgtgtgtgtgtgtgtgcgcgcagatacatgctc 392

                                                                       
Query: 61  acatgaaggccaaagggcaactttggggtttttgctcccaattccatagcatggtcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acatgaaggccaaagggcaactttggggtttttgctcccaattccatagcatggtcttca 332

                                                                       
Query: 121 gataccaaaacttcttgctaaatacagtctgaaatcatctgcaggatgctgtggccagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gataccaaaacttcttgctaaatacagtctgaaatcatctgcaggatgctgtggccagca 272

                                                                       
Query: 181 tctccattcagcctcaactctctgtctctgtctgtctgtctgtctatctgtctatttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tctccattcagcctcaactctctgtctctgtctgtctgtctgtctatctgtctatttatc 212

                                                                       
Query: 241 tatctatctctatttctctgtagaacaagctaatctagaactcactatgtagcccaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tatctatctctatttctctgtagaacaagctaatctagaactcactatgtagcccaagct 152

                                                                       
Query: 301 agcttcaaacccttcatcctctggtttgagtctcccaggtgctgtagtgtgtctccatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 agcttcaaacccttcatcctctggtttgagtctcccaggtgctgtagtgtgtctccatgc 92

                                
Query: 361 ctagtgctcaatgctctttac 381
           | |||||||||||||||||||
Sbjct: 91  caagtgctcaatgctctttac 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)