BAC Information

Click to search

BAC

Clone NameMSMg01-098E23
Chromosome3 (Build37)
Map Location 8,214,919 - 8,215,254
singlet/doubletsinglet
Overlap geneLOC633072
Upstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822
Downstream geneLOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098E23.T7 (MSMg01no098_e23.b1)MSMg01-098E23.TJ (MSMg01no098_e23.g1)
ACCAG314524AG314525
length699796
length of high quality
(start - end)
301 (35 - 335)341 (137 - 477)
definitionCHROMAT_FILE: MSMg01no098_e23.b1 PHD_FILE: MSMg01no098_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:22 2005CHROMAT_FILE: MSMg01no098_e23.g1 PHD_FILE: MSMg01no098_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCAGAGGATCCGCGGAATTCTTTGTTTACCTCTGCACCCTTTTTTTAA
ATGGGGTTATTTGATTTTTTGGAGTCTACCATCTTGACTTCTTTATATAT
ATTGGATATTAGTCCCCTAAGGGATTTAGGATTGGTAAAGATCCTTTCCC
ATTTCTATTGGTGGCCTTTTTGCATTATTGACATTGTCTTTTGACTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCAATCTTACAG
CACAAGATATTGCTGTTCTATTCAGGAATTTTTCCCTGTGCCCATATCTT
TGAGGCTTTTCCCCATTTTCTCCTCTATAAGTTTCAGCGTCTCTGGCTTT
ATGTGTAGTTCCTTGATCCACTTATAACCCCACCTTATCATCGTATTACA
ATGCATCAATTCAAAATCTTCTACATGATAACCACCAGTTATGCCAGCAC
CATTTGTTGAAAATGCTATTTTTTTTTCCACTAGATGGTTTTAGCTCCCT
TGTCAAAGATCACCTGACCATAACTGCGTGGCTCCATTTCTGGCACTTCA
GTTCCATTCCACTTGACCACTTGTCTGTCACTATACCAGTATCATGCCCG
TTTTCATCACTATTTGTTCCGCAAAACAGCTTTAGTCCTTGATTGCCCGA
CCCCCCCAAAGTTCTTTTATCATTGCCATGAGTTTCTGCTCTCCTACCT
TTTTNNNNNNNNNNNNNNTTTNNNNNNNNTTTTTCCCCCCCNTCCCCCCC
CTATCTTTTNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCAGAGACCAG
CAAACAGTGTATGCTAGATCCCCTGAGCGGTGCCAAAAATTCCTTCTCAG
AAAGCTGCCAATACTTGGACAGGTCAGTAGACAGCCCATTCTTCAGGAAA
TCACAAATGTCCTGAGCCCAGAGCTTCCCAGACAACGGAAAGAAATGCTC
AGATCGGGAGACCCAGCTCTATGATAAAGGAGATAAAGGCGGAACTTATC
CCAGGCGTTACCACGCGTCTGTGCATCACAAAGACTACAATGAAGTCAGA
ACATCCCCCCCCCCAATAGAATAAGACTACATCAAGGCAACCTATTCACT
CTAGTGTCCTCAAGTCGCTCCTGGAGCACAAATGGTGAGAACATGGGTGT
AGCCGTGCAATTCCTGGACTCCCATGGGCGCCTATAGAGTACAGAGATGA
AGAACGCCCTCATTGTGCAGGAAAGGAATGTGCTAACTAAAACTCCTAGT
GTTCACATTAATTGTCGTGGGTTGGGGGAGCGCCTGGATCAAGGTGACTT
CAGCAGGGTCTACTTGTGCTGATGTGTAATACTGGCCGTGAACTTGCTTC
TAATCTGGTCCTGTTTGATTGTAATAGTTCCTCTAATAAGCAAGGGAGGT
GATGGCTCTGGTGTGGGAGTTCTAGTTGCTTTAAAAACTTGTAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_e23.g1 MSMg01no098_e23.g1 CHROMAT_FILE:
MSMg01no098_e23.g1 PHD_FILE: MSMg01no098_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
         (341 letters)



>mm_chr3_8214719_8215459
          Length = 741

 Score =  571 bits (295), Expect = e-167
 Identities = 326/341 (95%), Gaps = 10/341 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccagagaccagcaaacagtgtatgctagatcccctgagcggtgccaaaaattccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccagagaccagcaaacagtgtatgctagatcccctgagcggtgccaaaaattccttc 260

                                                                       
Query: 61  tcagaaagctgccaatacttggacaggtcagtagacagcccattcttcaggaaatcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagaaagctgccaatacttggacaggtcagtagacagcccattcttcaggaaatcacaa 320

                                                                       
Query: 121 atgtcctgagcccagagcttcccagacaacggaaagaaatgctcagatcgggagacccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcctgagcccagagcttcccagacaacggaaagaaatgctcagatcgggagacccag 380

                                                                       
Query: 181 ctctatgataaaggagataaaggcggaacttatcccaggcgttaccacgcgtctgtgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctatgataaaggagataaaggcggaacttatcccaggcgttaccacgcgtctgtgcat 440

                                                                       
Query: 241 cacaaagactacaatgaagtcagaa---cat--ccccccccccaatagaataagactaca 295
           ||||||||||||| ||| |||||||   |||  ||||      ||||||||||||| |||
Sbjct: 441 cacaaagactacactgatgtcagaagaacatttccccg-----aatagaataagacgaca 495

                                                    
Query: 296 tcaaggcaacctattcactctagtgtcctcaagtcgctcct 336
           ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 tcaaggcaacctattcactctagtgccctcaagtcgctcct 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)