BAC Information

Click to search

BAC

Clone NameMSMg01-098H04
Chromosome3 (Build37)
Map Location 42,216,425 - 42,216,929
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219, LOC677788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H04.T7 (MSMg01no098_h04.b1)MSMg01-098H04.TJ (MSMg01no098_h04.g1)
ACCAG314627AG314628
length680685
length of high quality
(start - end)
530 (17 - 546)537 (57 - 593)
definitionCHROMAT_FILE: MSMg01no098_h04.b1 PHD_FILE: MSMg01no098_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:34 2005CHROMAT_FILE: MSMg01no098_h04.g1 PHD_FILE: MSMg01no098_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATCAGGAGAGGATCCGCGGAATTCACTCAGGTCGATTTTTCTTT
ATTGCTCCTATTTCCATTTTTGTTCTTGAGTTGTTTCCTTCACCTGTTTT
TTTTTTTAATGTCTTTCTTGATATCCTTTAAAAGATTTATTTATTTCCTC
CAAATTTTTATTTGTCTTTTTCTAGATTTCTTTCATGGATTTATTTTTTA
AGGATTCTACAATATTCATAAAGTTAGTTTTAAGGTCATTTACTTGTGGT
TCAGCTGTATTGGGATAGTCAGGTCTTGCTGCAATAGGATAATTGTGCTA
TAGTGGTAGCATATTGCACTGGCTATTTGGTGATTGTATTCTTATACTGC
TGTCTTAGCAACTGGGGTTGGGATGATTGTAGTCCTAGCTATTTATTTCT
GAGTTTGTCTTTCTTGAATGGGTATTTTATTCCTTGGATTGTGTTTCCTC
TTTTGTCTTCAGGGCTTTGTGTCTGGATTTCTAGCCATTAGCTTGACCTC
TTAAACCACTAGGGTATCTTTTTCCAGTTTGGGAGTTTGACTTCTGGCAG
CTTGCTTAGCCTTTGTTGTAGTAACTTGTCTCTGTTCTTCTGACTGATGT
GTTCTATACCTAAGGAGATGGAATTCGCTGGGATTAGGAATAGCTGTTTG
GCCACAAGAACATTTTATTTTTAAAAACGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCTTCTGTTTAGAGTCACTGCACCACAGGAAAGAGAAGCTCAAAT
GCAAGGATATTATGAGGATTTAAACACCTTGAAGTCACGTGAAAAAAAAT
GACCACAAAGAGGATGGGGAACTAAATACCTTTTCTGAGACTCTAGTCTA
GAAGGCAGAATGGCAGCATTATCAGGACCATAAAACCAACAAACAATAAA
TCAAACAATGAGAATTCAAGACCATCTTTAAAGCAAGTGAAAAGGTATCT
GCCTGCCTTTTCTCTACTGCTCTGCTGTTTCAACTGGAGGAACTTAAGAG
TGGAGAGGGTGCTGGGCATGGTGGCACACACCTTTAATCCCAGCACTCTG
GAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACGCTGTCTCGAAAAA
CCAAGAGAGGGTTAGAGACAGTGGAGGCCATGGAGACAATGATAGGCAGA
GCACAAGCCAATCCTCACCATCCATGAACGCTCATGGAACTGAGTCTAGG
TCTTATGCTTGGAAGACTGAAATACCTGTGGTCAGAATTAAGCCTTTTTG
TTGCTTTTAGTTAATGCATTTATTGCCATTAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h04.g1 MSMg01no098_h04.g1 CHROMAT_FILE:
MSMg01no098_h04.g1 PHD_FILE: MSMg01no098_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:34 2005
         (537 letters)



>mm_chr3_42216425_42217362
          Length = 938

 Score =  930 bits (481), Expect = 0.0
 Identities = 499/505 (98%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctgtttagagtcactgcaccacaggaaagagaagctcaaatgcaaggatattatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 cttctgtttagagtcactgcaccacaggaaagagaagctcaaatgtaaggatattatgag 446

                                                                       
Query: 61  gatttaaacaccttgaagtcacgtg-aaaaaaaatgaccacaaagaggatggggaactaa 119
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gatttaaacaccttgaagtcacgtgaaaaaaaaatgaccacaaagaggatggggaactaa 386

                                                                       
Query: 120 ataccttttctgagactctagtctagaaggcagaatggcagcattatcaggaccataaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 ataccttttctgagactctagtctagaaggcagaatggcagcattatcaagaccataaaa 326

                                                                       
Query: 180 ccaacaaacaataaatcaaacaatgagaattcaagaccatctttaaagcaagtgaaaagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaacaaacaataaatcaaacaatgagaattcaagaccatctttaaagcaagtgaaaagg 266

                                                                       
Query: 240 tatctgcctgccttttctctactgctctgctgtttcaactggaggaacttaagagtggag 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctgcctgcctgttctctactgctctgctgtttcaactggaggaacttaagagtggag 206

                                                                       
Query: 300 agggtgctgggcatggtggcacacacctttaatcccagcactctggaggcagaggcaggc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agggtgctgggcatggtggcacacacctttaatcccagcactctggaggcagaggcaggc 146

                                                                       
Query: 360 agatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggcta 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 agatttctgagttcgtggccagcctggtctacaaagtgagttccaggacagccagggcta 86

                                                                       
Query: 420 tacagagaaacgctgtctcgaaaaaccaagagagggttagagacagtggaggccatggag 479
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tacagagaaaccctgtctcgaaaaaccaagagagggttagagacagtggaggccatggag 26

                                    
Query: 480 acaatgataggcagagcacaagcca 504
           |||||||||||||||||||||||||
Sbjct: 25  acaatgataggcagagcacaagcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space:   489056
Effective search space used:   489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)