Query= MSMg01no098_j20.b1 MSMg01no098_j20.b1 CHROMAT_FILE:
MSMg01no098_j20.b1 PHD_FILE: MSMg01no098_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:47 2005
(439 letters)
>mm_chr3_34130555_34131391
Length = 837
Score = 768 bits (397), Expect = 0.0
Identities = 427/439 (97%), Gaps = 6/439 (1%)
Strand = Plus / Plus
Query: 1 aggaaaatgatgacatcatcgagctgaaagtacctttagcttctcagcttgtacaaaaaa 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaaatgatgacgtcatcgagctgaaagtacctttagcttctcagcttgtacaaaaa- 259
Query: 61 aggaactttcaaagcaaaaccctgagtcaaatcgatgtttaaggaatgtagttttagtca 120
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 -ggaacttccaaagcaaaaccctgagtcaaatcgatgtttaaggaatgtagttttagtca 318
Query: 121 aagtgatgatgatgatgacgacaatgatgaagatgaagacaaagatgatatatggctgat 180
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagtgatgatgatga---caacaatgatgaagatgaagacaaagatgatatatggctgat 375
Query: 181 ggttctcaaagcttgcttttgtattttaaaacttagatttatttttgtttccagcaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggttctcaaagcttgcttttgtattttaaaacttagatttatttttgtttccagcaggtg 435
Query: 241 tcactgtatgcaaataaaaaaaaaatgacagagttgccacagctgtgtgatggctcctcc 300
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 436 tcactgtaggcaaataaaaaaaaa-tgacagagttgccacagctgtgtgatggctcctcc 494
Query: 301 agcacagagctggcttctatgcagactgctcaagtctctttttattcctgtggcttgtga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agcacagagctggcttctatgcagactgctcaagtctctttttattcctgtggcttgtga 554
Query: 361 cattggtgtctttgcaccgtttctgtttctctggccacatgccctgtcggaagataccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cattggtgtctttgcaccgtttctgtttctctggccacatgccctgtcggaagataccac 614
Query: 421 tcagctgaatggatagaga 439
|||||| |||||| |||||
Sbjct: 615 tcagctaaatggacagaga 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 837
Length adjustment: 9
Effective length of query: 430
Effective length of database: 828
Effective search space: 356040
Effective search space used: 356040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_j20.g1 MSMg01no098_j20.g1 CHROMAT_FILE:
MSMg01no098_j20.g1 PHD_FILE: MSMg01no098_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:47 2005
(355 letters)
>mm_chr3_34277038_34277792
Length = 755
Score = 613 bits (317), Expect = e-180
Identities = 342/355 (96%), Gaps = 9/355 (2%)
Strand = Plus / Minus
Query: 1 tattcacatgaagctgctgtatttccagaggctttggggtttcagccaagctggttttat 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 420 tattcacatgaagctgctgtatttccagaggctttggggtttcagggaagctggttttat 361
Query: 61 catgcttcttctaaaagtcccttctactgtaaaatgtgatctcattaatgtgactacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 catgcttcttctaaaagtcccttctactgtaaaatgtgatctcattaatgtgactacaat 301
Query: 121 tcacattgctggggaaaaaaatcctccaattttgggtaattatttcctgaacaaaatagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tcacattgctggggaaaaaaatcctccaattttgggtaattatttcctgaacaaaatagt 241
Query: 181 tttctgtcttggtcccttccaccttttcctttctgcttggaaaaaaaaataaaaataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 240 tttctgtcttggtcccttccaccttttcctttctgcttggaaaaaaaaa--------aaa 189
Query: 241 aaacctgactgtgtcttcatgcaggtgtgacttttaaaagggaaaataatgcacacaaaa 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 188 aaac-tgactgtgtcttcatgcaggtgtgacttttaaaagggaaaataatgcagagaaaa 130
Query: 301 tgatggagaccacaagcccctaccacaaacagccgaagaaggaaggaaggaaact 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgatggagaccacaagcccctaccacaaacagccgaagaaggaaggaaggaaact 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
