BAC Information

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BAC

Clone NameMSMg01-099D01
Chromosome3 (Build37)
Map Location 65,552,441 - 65,552,698
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099D01.T7 (MSMg01no099_d01.b1)MSMg01-099D01.TJ (MSMg01no099_d01.g1)
ACCAG315184AG315185
length889683
length of high quality
(start - end)
---258 (57 - 314)
definitionCHROMAT_FILE: MSMg01no099_d01.b1 PHD_FILE: MSMg01no099_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:33 2005CHROMAT_FILE: MSMg01no099_d01.g1 PHD_FILE: MSMg01no099_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTATATTACCCATACCCGATTTATCTTTTATATTTAATTCAGCCTAC
TCCCTCCTTTTCTCCCCCCCTCCTCAAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCCCAAGAGGATCTGCGCGATTCAGTGACTTCTCTAAATGACAA
GATAATTGTGAAAACTGTTATATGATCTCTCTCTTGACCTCTTTCTATTT
ACAATAGCAACGTGGCTTCTATCCAAGTCACTGTTCCCTTGTGAGATCCC
ATTCCACAGGCTTTTGTGTATCATCACACCGAATCAAATACTCCAAGGCA
TATACCTTTTTTCAACATTCCCCACATGCCTTATTAATTCACTTCCTTTT
AAGACACTCAGGCCAATCGATGTCCTTTTAACTGCCTTATTTTTTATTCT
TATTTCTCAAGGGCCGCAGGCAAAAAATAACATGACTATCTTCTCTGTTC
CTACTATCCCCCTCCTATATTGTTTGACCTATCCACGTCTTGCCTCCTAC
ATACATCCCCCCAGTGTTTTTTACCGCGAACACATCACTTTGTCCACGCT
AGTACCTTCATTACTGTCAACGATCTTCTGTTATCGTAGAGCACATCCCT
CCATGTTTACACACACGAATTTTCCTGTATACCTCATCTCATTCTAATTC
TCGTAGAATGTTGTTTTTTCTTTTGCCCTATTACAACCGCGCTTTTTTGT
CGTTTTGAACTATACCTTTATTTATCACCATTGGTCTTGCTTACAAACAT
CTACCCTTCCCGATCGCACTATTCTACATTCATTCTCTCGTTATCCTCCC
ATACATTGTCCTTCCCACTCATACAATTATTTTTTTCTCCTATGGTATTG
TTGTATTACGTACGCGCTTTACTCTATTTTTTATTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTAATTTATTGCTGCATGAATCATTCTAGTGGGAAAATTATGTAT
TTTTTGTATTTTGAAAACTATTTCAAATTAAATGTGTTTTTATAAAATTA
AGTAAATTTTAAAATAAAACAGTAGGCAATGCTGCTTATACAATTAGCAC
AAACTTGCTGAAATACACACGGTATCCTTAAAACCACTTTCTTAAAGTAA
AATTCTTTCCCTAAGTCAAAGCATATTTCAAATGTTTTTCTTTGAATTTG
ACTTATAAAATAAGCAATTTAGTTTAATATTTTAGTTTTCTAGAAGAATA
CTACACCTGCCAAGACCATGGTATTTCATGTCCCCAGAGCGAATTTTCCC
GAACGAAAGAACTCTTACTGAACATGGCGCCCCGTGGATATACTGAAGGC
AAGACAAGGAAGTCCTTTCTGTACTCCATGTCTGATGTGGGCGCCATCAG
TACACACCCCCTCCTGTGGTCCTCACATTGCCATTCTGTGACCCACTCGC
ATGCTTTTATCATCCACCACACATATAGTAGCTCCCTTGCTCTGCATCTG
ACACCCCAAACCACTTCTTTGTTCCGTCTGTCTATCCCTGTTTTTTGCCC
ATGCCCCTCACCCCGCACTCCATAACGGCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_d01.g1 MSMg01no099_d01.g1 CHROMAT_FILE:
MSMg01no099_d01.g1 PHD_FILE: MSMg01no099_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:33 2005
         (258 letters)



>mm_chr3_65552241_65552898
          Length = 658

 Score =  460 bits (238), Expect = e-134
 Identities = 253/258 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttattgctgcatgaatcattctagtgggaaaattatgtattttttgtattttgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatttattgctgcatgaatcattctagtgggaaaattatgtattttttgtattttgaaa 260

                                                                       
Query: 61  actatttcaaattaaatgtgtttttataaaattaagtaaattttaaaataaaacagtagg 120
           |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 261 actatttcaaatgaaatgtgtttttataaaattaagtaaattttacaataaaacagtaag 320

                                                                       
Query: 121 caatgctgcttatacaattagcacaaacttgctgaaatacacacggtatccttaaaacca 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caatgctgcttatacaattagcacaaacttgctgaaatacacactgtatccttaaaacca 380

                                                                       
Query: 181 ctttcttaaagtaaaattctttccctaagtcaaagcatatttcaaatgtttttctttgaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcttaaagtaaaatgctttccctaagtcaaagcatatttcaaatgtttttctttgaa 440

                             
Query: 241 tttgacttataaaataag 258
           ||||||||||||||||||
Sbjct: 441 tttgacttataaaataag 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)