Query= MSMg01no099_g11.b1 MSMg01no099_g11.b1 CHROMAT_FILE:
MSMg01no099_g11.b1 PHD_FILE: MSMg01no099_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:52 2005
(243 letters)
>mm_chr3_33191061_33191703
Length = 643
Score = 431 bits (223), Expect = e-125
Identities = 235/239 (98%)
Strand = Plus / Minus
Query: 5 gaattcaaaagcttgaactgttctcctttgggtaggtaggtgtggcactaaattcccttt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaattcaaaagcttgaaatgttctcctttgggtaggtaggtgtggcactaaattcccttt 334
Query: 65 tttgggtgtatatagtgagaaaaggttggggtttatctattaagggtttatgttagagta 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tttgggtgtatatagtgggaaaaggttggggtttatctattaagggtttatgttagagta 274
Query: 125 tagaataatcatagttactcatgtgcactgagatgtgtgtgacaatattcagcaaactac 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 273 tagaataatcatagttactcatgtgcacagagatgtgtgtgacaatattcagcaaactac 214
Query: 185 tctgcagagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag 243
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 tctgcagagaggaaggaaggaagaaaggaaggaaggaaggaaggaaggaaggaaggaag 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no099_g11.g1 MSMg01no099_g11.g1 CHROMAT_FILE:
MSMg01no099_g11.g1 PHD_FILE: MSMg01no099_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:52 2005
(561 letters)
>mm_chr3_33095627_33096587
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 560/563 (99%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 1 aatatagcctaggatacatagcaagactctatcttaaagagagtcagaggagctgaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatatagcctaggatacatagcaagactctatcttaaagagagtcagaggagctgaggga 258
Query: 61 cacacaca--gacacacacacacagagggagagagaggcagagagacagaaagagattca 118
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cacacacacagacacacacacacagagggagagagaggcagagagacagaaagagattca 318
Query: 119 taataagcaatgaaactaggaaatttataacttataagaatcatcttatagacaatataa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taataagcaatgaaactaggaaatttataacttataagaatcatcttatagacaatataa 378
Query: 179 tgaatattattaattattatatattaaaataatataattaattgtttataactaaaatga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaatattattaattattatatattaaaataatataattaattgtttataactaaaatga 438
Query: 239 taggattaaggaaaatttctaaatcagaagacaaaataaaaaaatacctgaattttcaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taggattaaggaaaatttctaaatcagaagacaaaataaaaaaatacctgaattttcaaa 498
Query: 299 agataaaataccattgtaggtaattataagatatcttatttagcattttcatataacttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agataaaataccattgtaggtaattataagatatcttatttagcattttcatataacttg 558
Query: 359 taatagaaaagaaagactagtaaagaatagccaagataactttaaaataaataattagaa 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taatagaaaagagagactagtaaagaatagccaagataactttaaaataaataattagaa 618
Query: 419 caagaagagatgtacctgggcagagctcatcaccactgcattcctctgtacttcataaaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caagaagagatgtacctgggcagagctcatcaccactgcattcctctgtacttcataaaa 678
Query: 479 gagaggatcatcaagaatggtcaagcatcacaacatctggaatacagaatacaacagctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gagaggatcatcaagaatggtcaagcatcacaacatctggaatacagaatacaacagctg 738
Query: 539 gattaagaggagcaaaaggtgta 561
|||||||||||||||||||||||
Sbjct: 739 gattaagaggagcaaaaggtgta 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
