Query= MSMg01no099_i19.b1 MSMg01no099_i19.b1 CHROMAT_FILE:
MSMg01no099_i19.b1 PHD_FILE: MSMg01no099_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:05 2005
(582 letters)
>mm_chr3_147420664_147421652
Length = 989
Score = 1044 bits (540), Expect = 0.0
Identities = 572/586 (97%), Gaps = 9/586 (1%)
Strand = Plus / Minus
Query: 5 gaattcattaatcaatccaaaaataaatctgaagaaaattactgtaaagtcaatgacaaa 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattcattaatcaataaaaaaataaatctgaagaaaattactgtaaagtcaatgacaaa 730
Query: 65 tatcagtgtaaaatggaatataagccaaaagaaaagctttactaggacaaagctacaaaa 124
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 729 tatcagtgtgaaatggaatataagccaaaagaaaagctttactaagacaaagctacaaaa 670
Query: 125 tgac-----aaaaaaaaag--aaaaaaaaat-ccccaaaatcaagtccaataaagttgaa 176
|||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 669 tgacaaaaaaaaaaaaaagacaaaaaaaaatcccccaaaatcaagtccaataaagttgaa 610
Query: 177 aattttccacaagagctttgcaggactaagcatatatgaagaccactctgaatgaccaag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aattttccacaagagctttgcaggactaagcatatatgaagaccactctgaatgaccaag 550
Query: 237 cagaatttcacacaatctgtttgatttcctcagacatattgttcacatctgcaaaaattt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cagaatttcacacaatctgtttgatttcctcagacatattgttcacatctgcaaaaattt 490
Query: 297 tcagaatcaggatgcccctcacatttgatgtacatcaccacatctgtcctagactgaact 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tcag-atcaggatgcccctcacatttgatgtacatcaccacatctgtcctagactgaact 431
Query: 357 ctcatttctctttcatctaaacaatgttcatatttgttcctaccagtaacaaagaggagt 416
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctcatttctctttcatctaagcaatgttcatatttgttcctaccagtaacaaagaggagt 371
Query: 417 atcagcatgaagccatttcaacttaaaatttctaccaggaaccatgcacttttcaggcaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atcagcatgaagccatttcaacttaaaatttctaccaggaaccatgcacttttcaggcaa 311
Query: 477 agtgaatttaaaccatctacctgccaagtgacagagtccttcagcatctacaaagaatct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agtgaatttaaaccatctacctgccaagtgacagagtccttcagcatctacaaagaatct 251
Query: 537 ccacacctctcctctctacaccttcagcatcagagttgacaaatca 582
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccacacctctcctctctacaccttcagcatcagagttgacaaatca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 989
Length adjustment: 10
Effective length of query: 572
Effective length of database: 979
Effective search space: 559988
Effective search space used: 559988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_i19.g1 MSMg01no099_i19.g1 CHROMAT_FILE:
MSMg01no099_i19.g1 PHD_FILE: MSMg01no099_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:05 2005
(391 letters)
>mm_chr3_147284831_147285621
Length = 791
Score = 733 bits (379), Expect = 0.0
Identities = 388/391 (99%)
Strand = Plus / Plus
Query: 1 tccagtgagtgctggtgctctccttgacccagaggctcttccctatgtttatggatgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccagtgagtgctggtgctctccttgacccagaggctcttccctatgtttatggatgtac 260
Query: 61 tgagggaaaatggagagttaccattccaagtggggtgtgtgagacatttggaaaatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggaaaatggagagttaccattccaagtggggtgtgtgagacatttggaaaatctta 320
Query: 121 ggcaagatgccaccttctagtctgaacagcagtgtgccggctattgaacgaaggtcactg 180
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ggcgagatgccaccttctagtctgaacagcagtgtgcctgctattgaacgaaggtcactg 380
Query: 181 tacataaggcagagagaaacagctggtataaaggaaaacacaaaagtcagatggcaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacataaggcagagagaaacagctggtataaaggaaaacacaaaagtcagatggcaaagt 440
Query: 241 gtcttctactagggggagacttgtttgcaatgtcccacagccccacaagacaatccaccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttctactagggggagacttgtttgcaatgtcccacagccccacaagacaatccaccg 500
Query: 301 agtttgtccctcatcctcttactgttggcctcctgctctctgccacttcttcttccctca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtttgtccctcatcctcttactgttggcctcctgctctctgccacttcttcttccctca 560
Query: 361 ctacagggcacaggtatttgagactgtaaaa 391
|||||||||||||| ||||||||||||||||
Sbjct: 561 ctacagggcacaggcatttgagactgtaaaa 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
