Query= MSMg01no099_k02.b1 MSMg01no099_k02.b1 CHROMAT_FILE:
MSMg01no099_k02.b1 PHD_FILE: MSMg01no099_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:12 2005
(328 letters)
>mm_chr3_124254373_124255100
Length = 728
Score = 509 bits (263), Expect = e-148
Identities = 316/341 (92%), Gaps = 15/341 (4%)
Strand = Plus / Minus
Query: 2 ggaattctttattaaatcactgctgtgagaagacataacccagtgcacgtagcatcatta 61
||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 357 ggaattctttattaaattaatgctgtgagaagacataacccagtgcaggtagcatcatta 298
Query: 62 cgtacgtagcgaaagttctaaactttataatagtgaagaaactatagcaatcacaaataa 121
| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttaggtagggaaagttctaaactttataatagtgaagaaactatagcaatcacaaataa 238
Query: 122 gtaagaatcatgtatgtgcttctctatttgcatctgtctgtctctctcagtctctgtctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtaagaatcatgtatgtgcttctctatttgcatctgtctgtctctctcagtctctgtctc 178
Query: 182 tctgtgcctctgtcttttttgtctctgttatctcactgtgactctctttctttctctgcc 241
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
Sbjct: 177 tctgtgcctctgtcttttttgtctctg-tatctcattgtgactctctttctttctctgtc 119
Query: 242 tctctgtctccatctctctctctgtctgtgtgtgtgtgtg------tgtgtg----tgtg 291
||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 118 tctctgtctccatctctctctctatctgtgtgtgtgtgtgtgtgtctgtgtgtctatgtg 59
Query: 292 cgtc----tgtgtgtgtttacatttgaactttattgtggat 328
| || |||||||||||||||||||||||||||||||||
Sbjct: 58 cctctctgtgtgtgtgtttacatttgaactttattgtggat 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_k02.g1 MSMg01no099_k02.g1 CHROMAT_FILE:
MSMg01no099_k02.g1 PHD_FILE: MSMg01no099_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:12 2005
(313 letters)
>mm_chr3_124112809_124113522
Length = 714
Score = 592 bits (306), Expect = e-173
Identities = 312/314 (99%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 1 ttcttattttcaacttccagtgtcaaaagacactgtgatagtcaagaacccaagagaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttattttcaacttccagtgtcaaaagacactgtgatagtcaagaacccaagagaatt 260
Query: 61 tcaactccttcttcattgtttcactatgtaaaaatgactaacattcacaaccttaatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaactccttcttcattgtttcactatgtaaaaatgactaacattcacaaccttaatgag 320
Query: 121 gatttttttt-ctctttgcaaagtttggatgatacaattatgattaccagaaaatttttc 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttttttttctctttgcaaagtttggatgatacaattatgattaccagaaaatttttc 380
Query: 180 tataaaatcttcagggtatgagcaataattattaggtatctgataggataatttcgaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaaatcttcagggtatgagcaataattattaggtatctgataggataatttcgaaca 440
Query: 240 tgtgcagaaaaattccttacacaaggtgtactgctgaagtgtttgttgaaccgtaaaaat 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 tgtgcagaaaaattccttacacaaggtgtagtgctgaagtgtttgttgaaccgtaaaaat 500
Query: 300 atattttcaatggc 313
||||||||||||||
Sbjct: 501 atattttcaatggc 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 714
Length adjustment: 9
Effective length of query: 304
Effective length of database: 705
Effective search space: 214320
Effective search space used: 214320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
