BAC Information

Click to search

BAC

Clone NameMSMg01-099L10
Chromosome3 (Build37)
Map Location 81,699,533 - 81,699,852
singlet/doubletsinglet
Overlap genenone
Upstream geneGlrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099L10.T7 (MSMg01no099_l10.b1)MSMg01-099L10.TJ (MSMg01no099_l10.g1)
ACCAG315586AG315587
length680677
length of high quality
(start - end)
360 (56 - 415)323 (78 - 400)
definitionCHROMAT_FILE: MSMg01no099_l10.b1 PHD_FILE: MSMg01no099_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005CHROMAT_FILE: MSMg01no099_l10.g1 PHD_FILE: MSMg01no099_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCACTGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCAGCGAGGCGAAGCAGTGCAGGCAGGGAGGGGAAG
TCCCTTCTGCCAGTTCTGCAGCTGCAGTTGGCTCCACCTTGTCTCTGCCA
TGCCTTCTAGGTTTAAAGATTTCTCCTTGCTGCCCTGCAAGTAGGGCTGG
GCCAACAACAGACTGACCAGGCAGTGAGGAGTGCAGCAGAGCTTTAGGCA
GCACTTGGGGAGAGCAGACCTTTTCCAAAATGTTACAGCTCTCAGAACAG
AAGGCTCAGACGATGGAGTAGTTCTCCTACACTTTTAATCCTTCCGGATA
GGATTTTTACATACAGCTTTGGTGTGGGTAAGGGTCTGAAAACAAATGCT
TGGTTTGGTTTGAGAGCTTTGGGGAAACCTTATTTGCATGTGGGAGGGCT
TGGTGCTGCTCTGCGGGGGTGGGGTGGGGAGCTGTAGGAGGTTGTAGCTA
TGTGAGACAGCACACAGGAGACAGGAACTCCATAGGCGTGGCTGAACATT
TGTCATCCCATGCAGGTGGAAGTCATCTCCCATCTGGTCACCAGGTTTCC
AGACCTTTGCTCAAACGGTAACCAGGTTGTCAGTGCACCAGTCGACTGCT
GTACATTGAGCCATACCACCTGTTTTTATG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCATCATCTTGGGTTGTTCA
ATCCCAACTTCAGAATTCTTTCCTTGTCTTCTACTCTTCTTTATCACCCT
TGGTTATTCTTCATTTGTGGGGAACCAGGCACTGATGAGTCTTGGGGATC
CAAGGGCAGTAATTTTCCATTTATTCATGGTGAACAAATCATATGGCACT
CGATGAGTTCCCTCAGCCTCATGGGCAGAGAATGTGGATGTTTTTAAATA
AAATATTTCAGTGTTGAGGCTCAGTTTTGCAATGTCACCTGCTGGAGCTA
ATTATTTGAATGACAAGCCATCAATGATAGCATGTTGAGGAAAGTTTTCC
ATTTTATTAAAAAGTTCCATTTACAAAAGTAGCCTCAATTTGCCTTCTAT
TTGAACAATATTTCTGGTATTCAGAAATAGAACAAAGCTCTACTGTACTC
TACCTCCACATTAACAGAAGAAGCCCAGTTACCATCAATGTTCATTACAT
AATACTTATAAGCACCTGCTCATATGAAGCTTAATTGACTAAATTAATGA
AGATATTCTATTACATAAGCTCACTGTGAAGTTATATACATAATGCATTT
ATTTCCTTGACATCTGTTTTGGTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_l10.g1 MSMg01no099_l10.g1 CHROMAT_FILE:
MSMg01no099_l10.g1 PHD_FILE: MSMg01no099_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:19 2005
         (323 letters)



>mm_chr3_81699333_81700055
          Length = 723

 Score =  567 bits (293), Expect = e-166
 Identities = 314/321 (97%), Gaps = 2/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctcatcatcttgggttgttcaatcccaacttcagaattctttccttgtcttctactct 60
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 520 ctctcatcatcttgggttgttcaatctcaaattcagaattctttccttgtcttctactct 461

                                                                       
Query: 61  tctttatcacccttggttattcttcatttgtggggaaccaggcactgatgagtcttgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctttatcacccttggttattcttcatttgtggggaaccaggcactgatgagtcttgggg 401

                                                                       
Query: 121 atccaagggcag-taattttccatttattcatggtgaacaaatcatatggcactcgatga 179
           |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 400 atccaagggcagttaa-tttccatttattcatggtgagcaaatcatatggcactcgatga 342

                                                                       
Query: 180 gttccctcagcctcatgggcagagaatgtggatgtttttaaataaaatatttcagtgttg 239
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 341 gttccctcagcctcatgggcagagaatgtggatgtttttaaacaaaatatttcagtgttg 282

                                                                       
Query: 240 aggctcagttttgcaatgtcacctgctggagctaattatttgaatgacaagccatcaatg 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggctcagttttgcaatatcacctgctggagctaattatttgaatgacaagccatcaatg 222

                                
Query: 300 atagcatgttgaggaaagttt 320
           |||||||||||||||||||||
Sbjct: 221 atagcatgttgaggaaagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)