Query= MSMg01no100_b13.b1 MSMg01no100_b13.b1 CHROMAT_FILE:
MSMg01no100_b13.b1 PHD_FILE: MSMg01no100_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:51 2005
(648 letters)
>mm_chr3_46578607_46579654
Length = 1048
Score = 1232 bits (637), Expect = 0.0
Identities = 643/645 (99%)
Strand = Plus / Plus
Query: 4 ggaattcaaaacgacaactcagggaattcagagctcatcactgtgacatgaaaagcttga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaacgacaactcagggaattcagagctcatcactgtgacatgaaaagcttga 263
Query: 64 cttctcagctagattctctgcttcctccctctctgtcatttcctaggcctttctgtctca 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttctcagctagattctttgcttcctccctctctgtcatttcctaggcctttctgtctca 323
Query: 124 aatagatcccttaccaattccaaaacagctggcctaattcatctctcgaaaatggcaatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatagatcccttaccaattccaaaacagctggcctaattcatctctcgaaaatggcaatg 383
Query: 184 atcccctagtaacaaatctcgggtgcacaggtgtttgaaggaatcctagatatagctaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcccctagtaacaaatctcgggtgcacaggtgtttgaaggaatcctagatatagctaag 443
Query: 244 caggagccaaattccaggtgaaatcacctataaaggttataactatgagaccaaaaattg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggagccaaattccaggtgaaatcacctataaaggttataactatgagaccaaaaattg 503
Query: 304 cctactaatcttgcttctaaaggtttatggctcaaggctacacttaagaaccttctttct 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 cctactaatcttgcttctaaaggtttatggctcaaggctactcttaagaaccttctttct 563
Query: 364 caaagtgagtctccattatcctccactgcaactgttcgggagatagtttggtggagctca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caaagtgagtctccattatcctccactgcaactgttcgggagatagtttggtggagctca 623
Query: 424 gaagtataatgactgcagagatgcagcctctgtgtggaacacctgaaagttttatattcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagtataatgactgcagagatgcagcctctgtgtggaacacctgaaagttttatattcc 683
Query: 484 ttattatcatgaaacagtttcagtgacgttctacagtttcctgagaaggagtaagagata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttattatcatgaaacagtttcagtgacgttctacagtttcctgagaaggagtaagagata 743
Query: 544 cactctcttgtccttgatattcttaccgttgtctatccatctgatagcagatgcttttcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cactctcttgtccttgatattcttaccgttgtctatccatctgatagcagatgcttttcc 803
Query: 604 tataatttctctgagcaaaacgagtgcactttctgctttgatgca 648
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tataatttctctgagcaaaacgagtgcactttctgctttgatgca 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_b13.g1 MSMg01no100_b13.g1 CHROMAT_FILE:
MSMg01no100_b13.g1 PHD_FILE: MSMg01no100_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:51 2005
(542 letters)
>mm_chr3_46652195_46653137
Length = 943
Score = 996 bits (515), Expect = 0.0
Identities = 533/539 (98%), Gaps = 1/539 (0%)
Strand = Plus / Minus
Query: 5 ttcactta-ttacagctttaattgaactgacagatatgttggtaaggaaaatatggtaag 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcacttatttacagctttaattgaactgacagatatgttggtaaggaaaatatggtaag 684
Query: 64 ttacattcaaaattcaagataatggtaaagtatatgcctggagttttagagatattaaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttacattcaaaattcaagataatggtaaagtatatgcctggagttttagagatattaaac 624
Query: 124 cacgctggctaatcatagtttttagaagcataatgcagatgaataatgtaaaaattggtt 183
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacactggctaatcatagtttttagaagcataatgcagatgaataatgtaaaaattggtt 564
Query: 184 tcctgtgtgagatgggagaaggcagatatattatgccagtgtgaagatgtatatttatgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcctgtgtgagatgggagaaggcagatatattatgccagtgtgaagatgtatatttatgg 504
Query: 244 ctttcatgctcgactgtagccgcagtggtaagctgttagatttcagtttcatttgaaaga 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctttcatgctcgactgtagctgcagtggtaagctgttagatttcagtttcatttgaaaga 444
Query: 304 taacagcttgcagagctggccgactttaagctgccaatcatttaaagagctgcatttgtc 363
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 443 taacagctggcagagctggccgactttaagctgccaatcatttagagagctgcatttgtc 384
Query: 364 tcgattaaataagcaccggttattagagcagggcctgacatcctgggcagcctgtgcttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcgattaaataagcaccggttattagagcagggcctgacatcctgggcagcctgtgcttg 324
Query: 424 tgtacacaaggggcctgagctgcgtgggaaaccttcctggggacacagcacagagttcag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtacacaaggggcctgagctgcgtgggaaaccttcctggggacacagcacagagttcag 264
Query: 484 aggccattggtagaattcagacccacactggcctcacactatcaaagaaactattttca 542
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 aggccattggtagaattcagacccacactggcctcacactatcgaagaaactattttca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
