CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAATGTACCAAATGTGGAAGGCTGAGAAACTTCAAAAGAAATGTTC
AAAGTCCTTAGAGATCAGGAAATATAAATCAAAACAACACTGAGATTCCA
CCTTACGCCAATCAGAATGGCTAAGATAAAAACTCAGGTGACAGCACATG
CTGGCCAAAATGTGAAGAAAGAGGACCACTCCTCCATTGCTTGTGGAATT
GGAAACTGGTAAAACCATTCTGGAAATCAATCTGGAACTTCCTCAGAAAA
TTGGAAATAGATATACCTGAAAACCCAGCTATACCACTCTTGGGCATATA
CACAAAAGATGCCCCACCATGACACAGAGGCATCTTGTGTTCCACTATGT
TCAGAGTGGCCTTGTTTGTGATAGCCACAAGCTAGAAACAAACCAGATAC
CCCACAATGGGCGAACTGATACAGAAATATGGTTCATTTTCACAATGGAA
TATTATTCATCTATTGAGAACAATGACATCATGAGCTTTGCAGGCAAATG
GATTGAACTAGCAAATTGCATCCTGAGTGAGGTAACTCAGACCCGAAAGG
ACATGCATAATGTGTACTCACTAATAAATAGATATCAGCCAAAAAAAAAG
TATATAATACAACCTAAATGACTAAAGAAGGTTAAAAAGCTCAAGGTTCC
CAGTAAAGATGTCTCAA

GAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTTTGACCTGTGTTAGCTTCTTACC
ATGTGGGGTTCTTGTTATTCCCCTCTTCCAGGTTTGGCTGTCCAATAAAG
ATGTAGAGGAAAGGCACTTGATAAGGACAGCTTGTTTAGTTCAGCTTGTT
TTCAGTTTCTCCAGTAATGACAGAAGTAAAATAGAAAACATCTAACTGAG
GAGCCAGTTCTACGGTTTTGAGTAGCCCCTAGTATGAGAAAATCTCTGAG
GTATAATTTCTTCGAAAGTATTTTCATGGCATTGTACTATCATGTTTTAA
TGACCCCCCCCCTTTTTTTTAGTTCCAAAAACTGTTAACACTAGTGACCA
TGACTGGTTTGGGCATTATTTCCTCAACTCACATTCTGTGGAGGTAATAG
TCAGGAGTAAGATGGGGAAAAGCTATTTAGGTCTGTGGAGAGGAGAAAAG
TGAGGCTCTGCAGCTAGATGGTTAGCCTCTGAGTAACTGAGATTTGACTT
TTTACCAGGTTGGGGATTTAGTTGAATATTTTGTGTGTGTGTGTGTGTGT
GTCTGTCTGTCTGTCTGTCTGTGGGTCTGTCTGCCTGTCCCCGTGTGCGC
CGTGTACTTTGTGCGCCTGTGCGCGTTTCCTTATGCCTTATTCTTTTATT
CCATCACCTTCTT

Query= MSMg01no100_c17.g1 MSMg01no100_c17.g1 CHROMAT_FILE:
MSMg01no100_c17.g1 PHD_FILE: MSMg01no100_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:57 2005
         (528 letters)



>mm_chr3_142053840_142054770
          Length = 931

 Score =  603 bits (312), Expect = e-177
 Identities = 478/540 (88%), Gaps = 21/540 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttgacctgtgttagcttcttaccatgtggggttcttgttattcccctctt-ccagg 59
           ||||||||||||||||| ||| ||||||||||||||||||||| || ||||||| |||||
Sbjct: 710 tcttttgacctgtgttaacttgttaccatgtggggttcttgttttttccctcttaccagg 651

                                                                       
Query: 60  tttggctgtccaataaagatgtagaggaaaggcacttgataaggacagcttgtttagttc 119
           |||||||||| |||| ||||| ||||| |||||| |||| ||||||||||||||||||||
Sbjct: 650 tttggctgtctaatagagatgcagagggaaggcatttgacaaggacagcttgtttagttc 591

                                                                       
Query: 120 agcttgttttcagtttctccagtaatgac-agaagtaaaatagaaaacatctaactgagg 178
           ||||||||||||||||||||| || | || || |||||||||||||||||| ||||||||
Sbjct: 590 agcttgttttcagtttctccactagtaacaag-agtaaaatagaaaacatccaactgagg 532

                                                                       
Query: 179 agccagttctacggttttgagtagcccctagtatgag-aaaatctctgaggtataatttc 237
           ||||||| ||| ||||| || ||||||||||| |||| ||||||| |||| |  ||||||
Sbjct: 531 agccagtcctatggtttggaatagcccctagtttgagaaaaatctttgagctccaatttc 472

                                                                       
Query: 238 ttcga-aagta-ttttcatggcattgtactatcatgttttaatgaccccccccctttttt 295
           ||| | ||||| |||| |||| ||| |||||||||||||||||||      |||||||||
Sbjct: 471 ttc-ataagtactttt-atggaattttactatcatgttttaatga------ccctttttt 420

                                                                       
Query: 296 tt---agttccaaaaa----ctgttaacactagtgaccatgactggtttgggcattattt 348
           ||   |||||||||||    ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 419 ttttcagttccaaaaactgtctgttaacactagtgaccatgactggtttggacattattt 360

                                                                       
Query: 349 cctcaactcacattctgtggaggtaatagtcaggagtaagatggggaaaagctatttagg 408
           |||||||||||||||||||| ||||||||||||||||||||||   ||||||||  ||||
Sbjct: 359 cctcaactcacattctgtggcggtaatagtcaggagtaagatgaacaaaagctacatagg 300

                                                                       
Query: 409 tctgtggagaggagaaaagtgaggctctgcagctagatggttagcctctgagtaactgag 468
            |||||||||||||||  ||||||||||||||| ||||||| ||||| ||||||| ||||
Sbjct: 299 cctgtggagaggagaagggtgaggctctgcagccagatggtcagcctatgagtaattgag 240

                                                                       
Query: 469 atttgactttttaccaggttggggatttagttgaatattttgtgtgtgtgtgtgtgtgtg 528
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 239 atttgtctttttaccaggttggggatttagttgaatattgtgtgtgtgtgtgtgtgtgtg 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 931
Length adjustment: 10
Effective length of query: 518
Effective length of database: 921
Effective search space:   477078
Effective search space used:   477078
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)