BAC Information

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BAC

Clone NameMSMg01-100E14
Chromosome3 (Build37)
Map Location 87,186,475 - 87,186,844
singlet/doubletsinglet
Overlap geneFcrl1
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l
Downstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100E14.T7 (MSMg01no100_e14.b1)MSMg01-100E14.TJ (MSMg01no100_e14.g1)
ACCAG316025AG316026
length711711
length of high quality
(start - end)
544 (44 - 587)371 (74 - 444)
definitionCHROMAT_FILE: MSMg01no100_e14.b1 PHD_FILE: MSMg01no100_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:06 2005CHROMAT_FILE: MSMg01no100_e14.g1 PHD_FILE: MSMg01no100_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTTCTCCTTAAGGCTGAATAATGTTCTGCTGTGTGTAGGTATACA
CGTATGTGCCATGTTTTATCCATTCATGACTTGCTAAATACTTTGGTTGC
ATCTTCCCCCTTAATGAGAACAACAAATACCAAGAACAATGGCGATGACC
TATAATGCTGTGGGTTTATGAGGCCCCAGTGGCTAACAGCTGCAAAGGAG
GCAACTCATTCCTGGCACGTGACTCTTGGTAGGGATAGGGTATCCCTACA
TATTCTCCTACGGTGGAGTTATAAGGTAACTCCATTTAAGCTACTTTTGT
ATGTATATATTTTAGAAAGATACTGAGAACCTATCTCAAAGACCCTAGGG
AAGAACTTACTATTATTTTGCTAAGTGGACATAATATTAAACTGATTTCT
AATGACTTATCACCATGCCCATAGGCCAGTCTATCTCTTAACCCTCATCT
GAGAAGTTTCTTTTAGCAGTAGATGATCAACACAGAAACTCACAACTGGT
CAATGTACAGAGAGTACGAGACTGAGAAGTGTTTAGCTCTGGTGTATATC
ATCTATCTATATCACACCCTTCCTTCTGAGGGTTACGGGACAGAAAGAAT
ATAATAGCCAGAGGTGTCCCATGACTATGCCGAGACTAGGGTTCCTGCAA
CCAGTAGAACA
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGGCATCAAGGATTTCCATAGAAAC
ATGTAAAGCAACTCTTTCCTTGTCCTGGATGTGGGTTTGTATTTCTGTTT
AGGCTATGATTGAGTGCCTGGCCTTAGAGGAAAAGGAGAAATCAAACAAA
AGGCACACATAGCATTAGCACAGACATGACTTAACTTTGGATATCAATGA
TGGACTTAGAAGATCAGATCCTTCTGTTCCCTCTGATCATGGGGATCTCG
GGTCCTGTGTTGCTAGGTGCACCAGACAATCTTTTTTTTTTTTTTAAGAT
GAGGTTTTTAAAGGGTTTATTTATTTATTTATTTTATGTATATGAGCACA
CTCTAGCTGTCTGCAAACATAAGAAGAGGGCATCAGCTCCCATTACCAAT
GGTTGTGAGCAACCACGTGGTTGCGGGGAACTGAACTCAGGACATCTGGG
AGAGTAGCCAGTGCTCTCAGGCACTGAACTATCTCTCCAACCCCTAATCT
TTTTTAACCTTGTGGCTAGCAGTTTGTGAGCAAGACATCAGCTCATGCCG
AGGTACATTTATTATGCTTCCCCGCGAAAAATGCCTTGGGGTAAGACCGC
CTTTACCTTTCCACATATCTCATACCCAATGCAGAAATCATCTATTATTA
CCCCTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_e14.g1 MSMg01no100_e14.g1 CHROMAT_FILE:
MSMg01no100_e14.g1 PHD_FILE: MSMg01no100_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:06 2005
         (371 letters)



>mm_chr3_87186382_87187152
          Length = 771

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%), Gaps = 1/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggcatcaaggatttccatagaaacatgtaaagcaactctttccttgtcctggatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcaggcatcaaggatttccatagaaacatgtaaagcaactctttccttgtcctggatgtg 404

                                                                       
Query: 61  ggtttgtatttctgtttaggctatgattgagtgcctggccttagaggaaaaggagaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggtttgtatttctgtttaggctatgattgagtgcctggccttagaggaaaaggagaaatc 344

                                                                       
Query: 121 aaacaaaaggcacacatagcattagcacagacatgacttaactttggatatcaatgatgg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 343 aaacaaaaggcacacatagcattagcacagtcatgacttaactttggatatcaatgatgg 284

                                                                       
Query: 181 acttagaagatcagatccttctgttccctctgatcatggggatctcgggtcctgtgttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 acttagaagatcagatccttctgttccctctgatcatggggatctcgggtcctgtgttgc 224

                                                                       
Query: 241 taggtgcaccagacaatcttttttttttttttaagatgaggtttttaaagggtttattta 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 taggtgcaccagacaatc-tttttttttttttaagatgaggtttttaaagggtttattta 165

                                                                       
Query: 301 tttatttattttatgtatatgagcacactctagctgtctgcaaacataagaagagggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tttatttattttatgtatatgagcacactctagctgtctgcaaacataagaagagggcat 105

                      
Query: 361 cagctcccatt 371
           |||||||||||
Sbjct: 104 cagctcccatt 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)