Query= MSMg01no100_f07.b1 MSMg01no100_f07.b1 CHROMAT_FILE:
MSMg01no100_f07.b1 PHD_FILE: MSMg01no100_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:09 2005
(340 letters)
>mm_chr3_42302034_42302773
Length = 740
Score = 596 bits (308), Expect = e-175
Identities = 329/336 (97%)
Strand = Plus / Minus
Query: 5 gaattcaacttttaccaaaaaggtctgaaccccatttaaaaatggttttgtaactgaaga 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaattcaacttttaaaaaaaaggtctgaaccccatttaaaaatggttttgtaactgaaga 481
Query: 65 attgaatgaaattctttatgaaatagcatcaccttaagacaagataagggccctgaggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attgaatgaaattctttatgaaatagcatcaccttaagacaagataagggccctgaggat 421
Query: 125 agcattatgatgaactcaaaggctctcctacataactctgccaagaagcaagaaacagtg 184
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 420 agcattatgatgaactcaaaggctctcctaaataactctgccaagaagcaaggcacagtg 361
Query: 185 aaggatgtgaaagggtgagacttacagaacaaaagtaatacaattccattaccccacccc 244
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 360 aaggatgtgaaagggtgagacttacagaagaaaagtaatacaattccattaccccacccc 301
Query: 245 caaagaggacactggtcttcctcttccacctgggtctgagaaaatgcttcatggagagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caaagaggacactggtcttcctcttccacctgggtctgagaaaatgcttcatggagagaa 241
Query: 305 agaggtgggggtgggcagcgaacagcttttgaaaac 340
|||||||||||||||||| |||||||||||||||||
Sbjct: 240 agaggtgggggtgggcagtgaacagcttttgaaaac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_f07.g1 MSMg01no100_f07.g1 CHROMAT_FILE:
MSMg01no100_f07.g1 PHD_FILE: MSMg01no100_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:09 2005
(416 letters)
>mm_chr3_42166437_42167252
Length = 816
Score = 775 bits (401), Expect = 0.0
Identities = 413/417 (99%), Gaps = 2/417 (0%)
Strand = Plus / Plus
Query: 1 aattctgctctctatcagaatcaggcagaatttagcatccttaacctttctgttcctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctgctctctatcagaatcaggcagaatttagcatccttaacctttctgttcctctc 260
Query: 61 aagaaggaaatggactgtgggtcattttaatctccacagtgatgtcacttcacagagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaggaaatggactgtgggtcattttaatctccacagtgatgtcacttcacagagata 320
Query: 121 gatgccaaatgtgcgatgaggtggacaaacatcatcaaatacactcactgtcatcctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgccaaatgtgcgatgaggtggacaaacatcatcaaatacactcactgtcatcctgtg 380
Query: 181 ccacatgaaattgcgaaacagtgaagctactatttcctgaaatcagagcacccaggaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacatgaaattgcgaaacagtgaagctactatttcctgaaatcagagcacccaggaaat 440
Query: 241 aacaaagcaatatgatatttcaaacaaatattaaaatctgaggttttccttgctagtcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaagcaatatgatatttcaaacaaatattaaaatctgaggttttccttgctagtcca 500
Query: 301 ttttggaagttaagtgtctttttaaatataaattctgaagtactgatgcttttgcattat 360
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 501 ttttggaagttaagtgtctttt-aaatataaattctgaactactgatgcttttgcattat 559
Query: 361 cctacaatttctgtattttttttt-gcacatttgcgtctaagtgcacgtgtgtgtga 416
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 560 cctacaatttctgtattttttttttgcacatttgcgtctaagtgcacatgtgtgtga 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
