Query= MSMg01no100_h12.b1 MSMg01no100_h12.b1 CHROMAT_FILE:
MSMg01no100_h12.b1 PHD_FILE: MSMg01no100_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:20 2005
(490 letters)
>mm_chr3_117902438_117903327
Length = 890
Score = 909 bits (470), Expect = 0.0
Identities = 485/490 (98%)
Strand = Plus / Plus
Query: 1 agacttttatttacatgagcttagggcagggtcagcgaagagcttaaagagtgtctctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacttttatttacatgagcttagggcagggtcagcgaagagcttaaagagtgtctctga 260
Query: 61 aaagcagaagttggattgaaattggaaagtctgaagatgaagctctctaagtgatggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcagaagttggattgaaattggaaagtctgaagatgaagctctctaagtgatggtga 320
Query: 121 ggattacccaggtgctctatagctgtacctctgagaccacacccagtctctaagctttta 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattgcccaggtgctctatagctgtacctctgagaccacacccagtctctaagctttta 380
Query: 181 cagttttaatgtagcattactcacaatggtgattaaatgactgtaaaacacatctctttc 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttttaatgtagcattactcacaatggtgattaaatgactgtaaaacacatctctttc 440
Query: 241 actaggtaaccaatgataatatttgcctgtgtactgttcttcctctagcagtaaacactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaggtaaccaatgataatatttgcctgtgtactgttcttcctctagcagtaaacactg 500
Query: 301 taaatcttattcaaaacagattctaacaaaatacaaaggctgactcacccatggagaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaatcttattcaaaacagattctaacaaaatacaaaggctgactcacccatggagaagc 560
Query: 361 aggacttgggcagaatgattaggccacggagacagttgtcatgagctgctcatgtgaagg 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggactcgggcagaatgattaggccacggagacagttgtcatgagctgctcatgtgaagg 620
Query: 421 aagagggaagttgttacagagttcattttaatcaatcctgaaggtgcttaaatgaatagt 480
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagggaaggtgctacagagttcattttaatcaatcctgaaggtgcttaaatgaatagt 680
Query: 481 aagatgtagt 490
||||||||||
Sbjct: 681 aagatgtagt 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_h12.g1 MSMg01no100_h12.g1 CHROMAT_FILE:
MSMg01no100_h12.g1 PHD_FILE: MSMg01no100_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:20 2005
(241 letters)
>mm_chr3_118030550_118031191
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 240/242 (99%), Gaps = 1/242 (0%)
Strand = Plus / Minus
Query: 1 taggaag-atattttgattatgaatctcataggaaattacaaatggcagaagtgaaaatt 59
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 442 taggaagcatattttgattatgaatctcataggaaattacaaatggtagaagtgaaaatt 383
Query: 60 gttgatgtgggaaagataaaaagttactccagtgatttttgtctgtctgggaatcaatta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttgatgtgggaaagataaaaagttactccagtgatttttgtctgtctgggaatcaatta 323
Query: 120 aagaaatggaactttgaacaaagaaacttcataaatagacaccaatgacaggagatgagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aagaaatggaactttgaacaaagaaacttcataaatagacaccaatgacaggagatgagt 263
Query: 180 ctctttagaggcttaaatgttagcaatacttagagttagacttggcagtttcactgagag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctctttagaggcttaaatgttagcaatacttagagttagacttggcagtttcactgagag 203
Query: 240 gc 241
||
Sbjct: 202 gc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
