BAC Information

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BAC

Clone NameMSMg01-100I01
Chromosome3 (Build37)
Map Location 37,777,836 - 37,778,128
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik
Downstream geneLOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100I01.T7 (MSMg01no100_i01.b1)MSMg01-100I01.TJ (MSMg01no100_i01.g1)
ACCAG316188AG316189
length830781
length of high quality
(start - end)
30 (205 - 234)293 (145 - 437)
definitionCHROMAT_FILE: MSMg01no100_i01.b1 PHD_FILE: MSMg01no100_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:23 2005CHROMAT_FILE: MSMg01no100_i01.g1 PHD_FILE: MSMg01no100_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNCCACTTCTTTTCTCTCCTNATCTCTCCGACCCCCCCCCGCCCC
CCGCCCCCCCAATAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
TCAAGAGAGACCGCGGAATTCTGTATACTGCCCCGCTGAGGAAGATGCTA
CAGTTACGGTAAATGATCATACACCCTGTCTGGCAGCTGTCTCCAGTGCT
GCACTCCCCTTCACAGCTTATTTAATTATGAAACATGAATTATAGGTTGT
TTAGAGTACATCTTTTAAAATTTCTATTTACTATTATTATCACTGTGTGC
GTCTGTATGACATGTGTATTTGAGTGTTCATGTATTGACGCCACAAGACA
ACTTTGTGAACCAGACAATCCATCAAAATTCAACGTGTGTTATACTATAC
CACAATCAATTCTCTCCTACCTAGTGTTCCCCCCTGTCATTAATCGCAGT
AATCATACTTATNGACCATAAGCTCACATTCTTCTCCCCCCCCCATCTTC
TACTTCCCCTTCTTTTAACATACAAATACATATTCTTCTTCCCCCATCCC
CAATCTAAATACCAACCCTGTCATAACCCCATCCCGATCTCTTTACCTCC
CTATCTCCCACCACACTCTCCCACTTTATTACTGTTACTTACCTTATGCT
CCACCAGATCTAACCTCCTCCCCCCCTTTTCTTTTTCTCTTCCCCCATTA
TCTTCTCCCCCCCCTCATTTTACCCCCTTCTTATTTACCCCCCTACATCT
CCCCTACACCTCCGTCTCATTTATTCTCCACTAACCCTCATTCTATTTTT
CCCCTTCCCCCGCCTCCCCACTTTTTTTGC
TTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCCCCCCCCCTCC
CCCCCCTTTTTCCCCCCCCTATGATAGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACAGG
AGGTGGACAATGATGAAGCTGAGAGGAGCCATTCTAAAGCACAAATACTT
GGGTTAAAGGCATGATCTGGGGGCAAATACCCACCAGGCCCTCATTCCAT
GTAGAATTCACCCCGAAGTGTCTGATGGGCAGGATGTGAGCCCACGCTGA
GCAAATGTTCCCCCAGGATAAGCCTTGTCTTTCCTAGGTAGATCTTTTCT
TTACTCTGTTTTTCTCCCTGATCTATCTAAATGTGCCTGCTCTGCTCTCC
AACCCTGCAATGGCCTCTCCTGAGGTGACAGGATAGTTACAAATTAATAT
GAGAGGGAAGTATTACTAAAATTCAACTCCTCACTCCCTATAATACTGTC
AAGAAAAACCTCAGGAAGCTTTGCTGGAGTGTTCTACAACTCCGCACTCA
AAGTAAGCTCGATTTGCGACTTACACATTATCTACCCACAGTATTTACCT
CCCTAAACACGAACTAACACACTGAACAACGACAGCCAAACCTATTGTTC
CGATTTATGGAGAACATTACTCTCCATTGTAGCACAACCTGAAACTGCAT
CATTATTTACCTTGAAAATCAATATACCTGCCTGTAACAACTACCCCCTT
TCATGATATCCCGACCAAATGCCACCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_i01.g1 MSMg01no100_i01.g1 CHROMAT_FILE:
MSMg01no100_i01.g1 PHD_FILE: MSMg01no100_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:23 2005
         (293 letters)



>mm_chr3_37777636_37778328
          Length = 693

 Score =  567 bits (293), Expect = e-166
 Identities = 293/293 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaggaggtggacaatgatgaagctgagaggagccattctaaagcacaaatacttgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gacaggaggtggacaatgatgaagctgagaggagccattctaaagcacaaatacttgggt 434

                                                                       
Query: 61  taaaggcatgatctgggggcaaatacccaccaggccctcattccatgtagaattcacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taaaggcatgatctgggggcaaatacccaccaggccctcattccatgtagaattcacccc 374

                                                                       
Query: 121 gaagtgtctgatgggcaggatgtgagcccacgctgagcaaatgttcccccaggataagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaagtgtctgatgggcaggatgtgagcccacgctgagcaaatgttcccccaggataagcc 314

                                                                       
Query: 181 ttgtctttcctaggtagatcttttctttactctgtttttctccctgatctatctaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgtctttcctaggtagatcttttctttactctgtttttctccctgatctatctaaatgt 254

                                                                
Query: 241 gcctgctctgctctccaaccctgcaatggcctctcctgaggtgacaggatagt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcctgctctgctctccaaccctgcaatggcctctcctgaggtgacaggatagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)