BAC Information

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BAC

Clone NameMSMg01-101E08
Chromosome3 (Build37)
Map Location 132,705,024 - 132,705,310
singlet/doubletsinglet
Overlap geneGstcd
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream geneInts12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101E08.T7 (MSMg01no101_e08.b1)MSMg01-101E08.TJ (MSMg01no101_e08.g1)
ACCAG316727AG316728
length724734
length of high quality
(start - end)
439 (57 - 495)287 (59 - 345)
definitionCHROMAT_FILE: MSMg01no101_e08.b1 PHD_FILE: MSMg01no101_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:25 2005CHROMAT_FILE: MSMg01no101_e08.g1 PHD_FILE: MSMg01no101_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTATTCCGAGAGGATCCGCGGAATTCTTTGTT
TATCCCACTTTTAATAAGGTTATTCGGTTCTTTGGAGTCTAACTTCTTGG
TTCTTTGTATATATTGGATATTAGCCCTCTATCAGATGTGGGATTAGTAA
AGATCTTTTCCCTATCTGTTGGTTGCCTTTTTGTCTTATTGACAGTGTCT
TTTGCTTTACAAAAGCATTGTAATTTTATGAGGTCCCATTTGTCGATTCT
TGATCTTATAGCACAAGTCATTGGTATTCTATGCAGGAATTTTTTTCCCT
GTGCCCATATCTTCGAGGCTCTTCCCTAGTTTCTCCTCTAAAAGTTCCAG
TGTATCTGGTTTTATGTGGAGGTCCTTGATCCACTTGGACTTGAGCTTCT
TCAAGGTGATAAGAATGGATCGAATCGAATTCTTCTACATGTCGACTGCC
AGTTGAACCAGCACCATTTGTTGAAAAGGCTGTCTTTTTTCCACTGGATG
GCTTTAGCTCCTTTGTCAAATATCAAGTGACCATAGGTGTGTGGGCTCAT
TTCTGAGTCTTCAATTCTATTCCATTGATCTACCTGTCTATCTTTGGATC
CGTATCATGAAGTTTTTATTACAATTCCCCTGAAGTACAGCTCGGGGTCA
GGGATGGAAGTTTTCCCCAAAATTCCTTATATTTAAAAAAAATTTTTGGC
TTTCCTAAGTTTTTTGTAATTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCATTTCCTTGTTTAATCTGCTCTGCTGTAAAATATTCCTTAA
GAATGCTAATAGATTCATGAACCTATTTTTGGTTGAAAAAAATTACAAAA
TAAAATACAGCCAATACTAGCAGATTTATTCTATTCTTTGTGCCTCAAGG
AAAACAGAGAAAGTACTGAATGAAAGTTACACAGCATACTTTCCTTATTG
GAAACCCATTTCTGATTTATGAGACAGTATTGGGTTAACCGATCCTACCC
TGATTACTGGGTATGTTGCGGGGGTGGACAGTACTGACCAATATCAACAC
CTCAGTCCTGGTTTTGAGCACTGTACTGTGGATTTTTTTTTATTGTTTTT
TATTTTTTTTGAGAAATATGTATAAACAATCTAGGCGACCCTGGCCGAGC
CAGCTATCCGGGGACAGGAAACACGTATTAATTCAGGCCTTCTTGAAAAC
CTAACTTTTCCCTACCCTGGGTATTTTTTAAATTCTTTGCTAAAGTTAAT
CTGATATTAGGAATAGATTAAAGCCGCCACCTTTATAGAACAACTCATTT
CGTATCTATATAACCTCTGTTCTACCTGATATCATGTTTCAACTTCGAAT
CCATTGGGTGGTATCCTTACCCAAACTAATGTCTAGAGGAAAATGTTTAT
GACAGAGCGCTCCCCGCTTAAACCCCCCCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_e08.g1 MSMg01no101_e08.g1 CHROMAT_FILE:
MSMg01no101_e08.g1 PHD_FILE: MSMg01no101_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:25 2005
         (287 letters)



>mm_chr3_132704824_132705510
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttccttgtttaatctgctctgctgtaaaatattccttaagaatgctaatagattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttccttgtttaatctgctctgctgtaaaatattccttaagaatgctaatagattcat 260

                                                                       
Query: 61  gaacctatttttggttgaaaaaaattacaaaataaaatacagccaatactagcagattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacctatttttggttgaaaaaaattacaaaataaaatacagccaatactagcagattta 320

                                                                       
Query: 121 ttctattctttgtgcctcaaggaaaacagagaaagtactgaatgaaagttacacagcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctattctttgtgcctcaaggaaaacagagaaagtactgaatgaaagttacacagcata 380

                                                                       
Query: 181 ctttccttattggaaacccatttctgatttatgagacagtattgggttaaccgatcctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccttattggaaacccatttctgatttatgagacagtattgggttaaccgatcctac 440

                                                          
Query: 241 cctgattactgggtatgttgcgggggtggacagtactgaccaatatc 287
           ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaatacagggtatgttgcgggggtggacagtactgaccaatatc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)