BAC Information

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BAC

Clone NameMSMg01-101I08
Chromosome3 (Build37)
Map Location 25,982,722 - 25,982,955
singlet/doubletsinglet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I08.T7 (MSMg01no101_i08.b1)MSMg01-101I08.TJ (MSMg01no101_i08.g1)
ACCAG316912AG316913
length728842
length of high quality
(start - end)
234 (51 - 284)44 (127 - 170)
definitionCHROMAT_FILE: MSMg01no101_i08.b1 PHD_FILE: MSMg01no101_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:45 2005CHROMAT_FILE: MSMg01no101_i08.g1 PHD_FILE: MSMg01no101_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCAAATGCGAGAAGATGCGCGGAATTCATGGTTATTTTCATAAGAAG
TTCAAAAAAGTTAACTTTAAGATTCTTTTCATATCATGGATTATTTTTAT
CAGAACGCCAATCCTCAAGAGGGAAATATACTTCATTGAAACATGGTTTT
CACATCTCAGAGATGTATGATATTCTGTTCCTGTAAGATCCTCGTGAGAA
ATATTCAGAATAACTTCAGAGGAGGCCACATTTTCATGTTGAATTTTCAT
GTGCTCATTGTAAGTGTTAATTGTTCCAAGGTCAAGATGAGAGTCTGTAT
TTTATGGAATTGCTGCCTTGCTGAAAGGATTGCTACATACTCTCTCCAAG
TATACTGATATTAATACTATAAACTCTACTAATGATAACTTATAGAAATT
AGTCTAATCTCCTTGTTTGCTGTAATAAAACATTTACATTCTTCCCTATA
CATTTATGTTGCCCCAGACAGTACTGTTCCCGTTTACTACACCTTCTACG
ACTTAATTTTGTTGAATTAACAGTGGATGCTTATCCACATTTCTCACTAT
TTATGGATATATTTTCAAGTATTGCTGCTAATTTTTAACGTCCACGATGT
TCATTGGTGCCTCATCTGTGATTTTAACAACGTTAACTGTAAGTTTGAAA
CAAACAGAGGCCGAATCTTCCTACCTCTGTTGTGTTGATAATAACACCCC
TTAAAAAAAGTTCTTTTGCCCAGCAATG
NNNNNNNNNNNNNNNNNNNNNTTTTTTCTTCCCCNCCTTCAATTTTTNTT
TTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACAGAAATAACATTGACCTTCAG
AAGCCGCTGTATTTGGGGCACTTAACAGAATCAACGCTCTGTTAAGAAGC
ATGGACAAGAAATGATCCAGGCTCATCATAAGTGAGCTGGAGGGCCACAA
ATATGTATACGCGGATTCAAGAAGACCTTAGGAATCTCCTTGAATCCTGC
CCATGTGATCTTGAGGCTCAAACCCCTCCCCACTGCAGAACCTACTATAC
CAACCACTTGTTCCGCGCTCCCTCTTCCTTTTTGTCTCAGCCCGAAAGAC
ACCATACTTGAACCTGTCAGCACTTCTTCCCACCGTCCCCACACATGTAG
CATATCATCCACAAATTGTGTCACCTCATATGTTATCATCTGCATCGCTG
GCCCCCAATCTGCAACTGCTTGACTCATCAGCACACCCCCATATTCATTT
TACCCGTTAGCAACCCTCACATCGATTTCCATTCTTTCTTGAATAATAGT
TACGCCACCTTCAACTCTAATTTTCGGTTGTTAATCTCATTTCTACCTCA
AATTTTAATATAACTTATATATTTATAACTTTATACCTACTCATTAATCA
CCTTTCATTTTTCTTTCGTCTTTACCTTCCTTTCCTTCTCACCTCTATTT
CAATGCATCCTTATTATTTTTCTAATTCTTATCGTGAGCCCCTAATTTCT
TTTGTGATACTACTATCAACTACGCTCCTGCCCGCTCGACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i08.b1 MSMg01no101_i08.b1 CHROMAT_FILE:
MSMg01no101_i08.b1 PHD_FILE: MSMg01no101_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:45 2005
         (234 letters)



>mm_chr3_25982522_25983155
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcaaaaaagttaactttaagattcttttcatatcatggattatttttatcagaacgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcaaaaaagttaactttaagattcttttcatatcatggattatttttatcagaacgcca 375

                                                                       
Query: 61  atcctcaagagggaaatatacttcattgaaacatggttttcacatctcagagatgtatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atcctcaagagggaaatatacttcattgaaacatggttttcacatctcagagatgtatga 315

                                                                       
Query: 121 tattctgttcctgtaagatcctcgtgagaaatattcagaataacttcagaggaggccaca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 314 tattctgttcctgtaagatcctcatgagaaatattcagaataacttcagaggaggccaca 255

                                                                 
Query: 181 ttttcatgttgaattttcatgtgctcattgtaagtgttaattgttccaaggtca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttttcatgttgaattttcatgtgctcattgtaagtgttaattgttccaaggtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)