BAC Information

Click to search

BAC

Clone NameMSMg01-102B05
Chromosome3 (Build37)
Map Location 16,096,537 - 16,096,928
singlet/doubletsinglet
Overlap geneYthdf3
Upstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneLOC100040034, LOC100040059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102B05.T7 (MSMg01no102_b05.b1)MSMg01-102B05.TJ (MSMg01no102_b05.g1)
ACCAG317321AG317322
length695726
length of high quality
(start - end)
400 (67 - 466)136 (125 - 260)
definitionCHROMAT_FILE: MSMg01no102_b05.b1 PHD_FILE: MSMg01no102_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:32 2005CHROMAT_FILE: MSMg01no102_b05.g1 PHD_FILE: MSMg01no102_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATTTGCGGCGCTATACGACTCCTATATCCAGAAATCCGCGGAATTCA
AAAGGACTGCCACAGAAGCACAGGGCCCCACACATGTCTGCACCACATTC
TGGTGTACATATTATAACTAAGTTTAATATTTTTATGGGACTTCTGAATG
TATAAATGAGTGGGTCTCTGACTCTTCAGACTTCTCTTGGAGCTCTTTTC
CTTTTATTGGTCTGCCTTGTCCAACTTCAATGATGATTTCTTTTTATCTT
GTTATGCTTTACTTTGACAAAAAAACAGATTTTTTTTAAAGAGAGGGAAA
CTAATAAAAAGGCATATTTCTTTAAAATAATTCTGATTGTCTAAAATTAA
AAACCATTCTCTACTGTTGAAAAATAAATAACTCTGATGACAGATGTCTC
ATTCTTTGTTCTATGTTTGATTTCTGAAACCCAGAACACAGCTTTAGAAT
TTGTAAAAGCATGAATGGTAGGTAAAAACCTATCTAGTCATTCAGAATTT
ATTTATTTATTTTCTAGTTTGATTTTTTTTAAAGATCTATTTATTATATG
TAAGTACACTGTACCTGCTTTCATACACTTATAACTACTACTTTCTACTT
TGTTACTTTCGCCTGTGATTCCCCCCGTGTTTCCCGTTTATTGCACTTCG
CACCTTTATTCCACCCTACTCGCGTCCCCTTTTCTATTACTTCCC
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCNNCCCCGTA
TTTTNCTTCGATATATGGTAGGCTGGGGCCGCCGTCCAAAAXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATAAAACCAGAGACACTGAACTTA
TAGAGGAGAAAGTGGGGAAAAGCCTCACAGATATGGGTTCAGGGGGAAAG
TTCCTGAATAGATCTGCAATGGCTGTCTGGCGAGATGGCTCAGTGGTTAA
GCACGCCCACTGGCTCTTTCTAAGAGGGTCCCAAATTGAAATCCCGCCAC
AACANTTGGGGGTGTTTGGGGGCGCCTTCTCTTTTCTCCTTACCACCCCT
GTTAACGCGCCCGCACGCATATTTGGCTTTGTAACGTCCCATTCTAACGC
TCGCTCAGCTTCTCCCGCAATAAGGCCACCTTCAATACAGTACCTCAGAT
TGCGAACAACCTTTGAGTTAGCTGGTCATGCCTGCGGGTTAGAATCGCCA
GCGTGGCGGGGGCCCTTTATCCGGTACTTCAGTGTGAGCTGCCCCACCCT
TACAACACCCGCAGCCACGTAGTAACAATAATATCTTTCACATCAATTTT
AATAATATTGACCTTACCATCCAGCGAAAACCGGAAGGTGCGCTAGGTAC
AAACTCTTTAGATCGGATATATCTGCTTTTCCTGCTCATAATTGATGTTA
TTCCCTGCGTGCGCCCAGCCGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_b05.b1 MSMg01no102_b05.b1 CHROMAT_FILE:
MSMg01no102_b05.b1 PHD_FILE: MSMg01no102_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:32 2005
         (400 letters)



>mm_chr3_16096147_16096947
          Length = 801

 Score =  685 bits (354), Expect = 0.0
 Identities = 386/402 (96%), Gaps = 13/402 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcacagggccccacacatgtctgcaccacattctggtgtacatattataactaagttta 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 782 agcacagggccccacacatgtctgcaccacatcctggtgtacatattataactaagttta 723

                                                                       
Query: 61  atatttttatgggacttctgaatgtataaatgagtgggtctctgactcttcagacttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atatttttatgggacttctgaatgtataaatgagtgggtctctgactcttcagacttctc 663

                                                                       
Query: 121 ttggagctcttttccttttattggtctgccttgtccaacttcaatgatgattt-cttttt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 662 ttggagctcttttccttttattggtctgccttgtccaacttcaatgatgattttcttttt 603

                                                                       
Query: 180 atcttgttatgctttactttgacaaaaaaacaga-ttttttttaaagagagggaaactaa 238
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 602 atcttgttatgctttactttgacaaaaaaacagaattttttttaaagagagggaaactaa 543

                                                                       
Query: 239 taaaaaggcatatttctttaaaataattctgattgtctaaaattaaaaaccattctctac 298
           |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 542 taaaaaggca-atttctttaaaataattctgattgtctaaaattaaaaaccagtctctac 484

                                                                       
Query: 299 tgttgaaaaa-taaataactctgatgacagatgtctcattctttgttctatgtttgattt 357
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgatgaaaaaataaataactctgatgacagatgtctcattctttgttctatgtttgattt 424

                                                     
Query: 358 ctgaaacccagaacacagctttagaatttgtaaaagcatgaa 399
           ||||||||||||||||||||         |||||||||||||
Sbjct: 423 ctgaaacccagaacacagct---------gtaaaagcatgaa 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 801
Length adjustment: 9
Effective length of query: 391
Effective length of database: 792
Effective search space:   309672
Effective search space used:   309672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)