BAC Information

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BAC

Clone NameMSMg01-102D13
Chromosome3 (Build37)
Map Location 39,709,663 - 39,843,928
singlet/doubletdoublet
Overlap geneLOC100041458
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D13.T7 (MSMg01no102_d13.b1)MSMg01-102D13.TJ (MSMg01no102_d13.g1)
ACCAG317427AG317428
length729763
length of high quality
(start - end)
235 (65 - 299)176 (122 - 297)
definitionCHROMAT_FILE: MSMg01no102_d13.b1 PHD_FILE: MSMg01no102_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:44 2005CHROMAT_FILE: MSMg01no102_d13.g1 PHD_FILE: MSMg01no102_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,709,663 - 39,709,897)(39,843,753 - 39,843,928)
sequence
ATAATTTGCGGCGCTATACGACTCCTATTCCGAGAGATCCGCGGAATTCA
ACCTATTCCTCAGCTAAGCAGGGCTCACATTGGTTTAGAAACTAAGCTGA
GAATCATGGAGTCTGCATGGGTCTGAGCTAAGTACTCTGCCTAAAAGTGG
AAGCATGGGAAATTTTGCCAGCACTTGGGACCCTTTTGCTTCTACTGGAT
TATATGAGAACTTGTACATAGTCTTATTATACTGTGTTAATATGTTATAC
CATGAGCTGTTGATGTACTTTTTTTTTCTTTTTTGCATGGAAATGGAAAA
AGACTGCCCAGGTTTTGGGTGGTGGGTTGGCCCGACAGTACCTAGCTCCT
TTCTTCTTCCCCCATTCCCCCCACTCCCTTTCCTTCCTATATACCACTCT
TTTCCCCCTTTAAACTTTTTTATATATTTTCTCTCCTCCCACTTCCTCTT
CCTTTACTCCCCTTCTCCTCCTTTACTATTTTATATTTTTTATTATCCTT
TCTCATTTTCTATCATTTCCTTTTCTCCTTTCCTATCCTACTACCTCTCC
TTCATTCCCCTTGTTCATCCATTCCTCCCATTTCTCCTCCACATATTCCA
TCCTTTTTTCTTCCTTTTCTTTTCTTACCCATCATCCTATTCTCACCCTT
CTTACCCCTTACTTAATCCACTATTCTTCCTCCACATTTCCTCCCATTCT
CCCTACCCTCCCTTACTTTTCTTACTATC
NNNNNNNNNNNNNNNNNNNNNNNCCCCCTCCCCCCNNNNNTTCTGATAAT
CTNTCGATGATGTGGGTGGCCTGGCGGCCGCCGTACAAAACATTTAGGTG
ACCTATAGATTTACCCGAGAAATTCACTGCTACACATTTCAGTGTGCAGT
AATGACTTTTCACTATGAGTCCTTGTGTGTCACTTTTATCTGAGGTCTCT
GCCTGTATTGAGTCAATTTTATTATCGTTAATGGGACTCTCAATCTTTTG
GCAGCATCTAGCAGCCTCAGGGAGGGCGGCCAACCAGCAATGAGAGCAAA
GGCAGAAACAGGAGTTGGTGGGGAGGGTTGAGGGAAAGGAGACCAGAAGT
TCAGCCAAACAGCCAGTTTTTATGGACTAGGCCAGCTCCAAGAGGTCATG
CATCAGTCAGTCTACATTTGACAACCAAGTGAACTCATCTACTGAGCCTC
AGTCAGCTTCTCATTGTGGAGTTCCATCTTGGGAGGGAGCGGACCTGACT
ATTCCTTAAGCTCTGGAGGTACTTCCAACAAATTCACTGTGTTCTGAATC
CTAGTTCTGAAAAACATTACCCATGGAATCAAAAGAGATGATGTTGTTTT
CATCAGTATTGAGGAGGTCTGAAAGTTAAATTTTTAAAGAACATTTCCTT
TTTTGCCGAGAAATCCAAACCATAAAAGGTGCCTCTTTATTCTAATTCCT
CATGGAACTTTGGTGTATCGTTTCTGGGACTGTATTCCTTAATGGTTGAG
TTACAATAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d13.b1 MSMg01no102_d13.b1 CHROMAT_FILE:
MSMg01no102_d13.b1 PHD_FILE: MSMg01no102_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:44 2005
         (235 letters)



>mm_chr3_39709463_39710097
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagcagggctcacattggtttagaaactaagctgagaatcatggagtctgcatgggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 taagcagggctcacattggtttagaaactaagctgagaatcatggagtctgtatgggtct 260

                                                                       
Query: 61  gagctaagtactctgcctaaaagtggaagcatgggaaattttgccagcacttgggaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctaagtactctgcctaaaagtggaagcatgggaaattttgccagcacttgggaccct 320

                                                                       
Query: 121 tttgcttctactggattatatgagaacttgtacatagtcttattatactgtgttaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcttctactggattatatgagaacttgtacatagtcttattatactgtgttaatatg 380

                                                                  
Query: 181 ttataccatgagctgttgatgtactttttttttcttttttgcatggaaatggaaa 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataccatgagctgttgatgtactttttttttcttttttgcatggaaatggaaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_d13.g1 MSMg01no102_d13.g1 CHROMAT_FILE:
MSMg01no102_d13.g1 PHD_FILE: MSMg01no102_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:44 2005
         (176 letters)



>mm_chr3_39843553_39844128
          Length = 576

 Score =  325 bits (168), Expect = 1e-93
 Identities = 174/176 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcactgctacacatttcagtgtgcagtaatgacttttcactatgagtccttgtgtgtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 376 attcactgctacacatttcagtgtgcagtaatgacttttcactatgagtttttgtgtgtc 317

                                                                       
Query: 61  acttttatctgaggtctctgcctgtattgagtcaattttattatcgttaatgggactctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acttttatctgaggtctctgcctgtattgagtcaattttattatcgttaatgggactctc 257

                                                                   
Query: 121 aatcttttggcagcatctagcagcctcagggagggcggccaaccagcaatgagagc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aatcttttggcagcatctagcagcctcagggagggcggccaaccagcaatgagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)