BAC Information

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BAC

Clone NameMSMg01-102G04
Chromosome3 (Build37)
Map Location 143,106,592 - 143,199,449
singlet/doubletdoublet
Overlap genenone
Upstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
Downstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G04.T7 (MSMg01no102_g04.b1)MSMg01-102G04.TJ (MSMg01no102_g04.g1)
ACCAG317544AG317545
length702703
length of high quality
(start - end)
493 (69 - 561)355 (71 - 425)
definitionCHROMAT_FILE: MSMg01no102_g04.b1 PHD_FILE: MSMg01no102_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005CHROMAT_FILE: MSMg01no102_g04.g1 PHD_FILE: MSMg01no102_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,106,592 - 143,107,084)(143,199,095 - 143,199,449)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTC
AGTGCGTTTCCTGAGACAGTAACTACTCTCCCTGAATAATAGCTAACTAG
ATGCATGATTTTCTTGGTTTATATTTTTAAATTCTGATGTTAATCATGAC
CTCTGTGTCGCTATTATAATGCTGATAAGTTAAAAACTTCAGATTTTATA
AATTATAATGCAACTTTTACAAGTTATTTTTATGTATTCTAATTAGCTTT
TAATATCTTTTACAGTCTTTATTTTTATTTTGTGTGTCTGAGTGTTCTGC
CTGCATGTATAACTGTATACCTCGTGCATGCAGATCACACAAGCCAGAAG
AGGATGACAGATCCCCTTGGAACTGGAGCTAGAGACTGTTGCCATATCGG
TGCTAGGAATCAAATCTACCTCCTCTGGCAAGGCACTCAGTGCTCTTGAC
TACTAAGCCATCTCTCTAGCTCATGTGTTGAAATTTTAATGATGCCCAGG
TTCATGGATTGGAAACTTGGTCCCCAACTCCTTTTTCTTTGCAAAAGCCA
TCTCCCGAATGGCCAGCAGATTTCTTAAAGGGCATGCTCTTGAAGGCAAT
GACTGGCCCCTGCTTTCTTCCATGTTCCAGGCGCCCATTTGGGAAGCTAC
CCTCCATACCTCACCACAAGCTTCTCAAACCATTACTCTTTCGACTGAAA
CC
TGAACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGGTAGAAAGCCAGATGGCTGAGTTGGCCT
TCCCTCCATGGTCTTCATTTCTGCCTTTCTTGAACCAGCCATTTAACAGT
TGCAGATGAAGTGTTGTGTGAAGTGCAGACATACAATAGAACTCAAGACC
TGAGACATTTGTATGCCTCAAGTCAAGCATATTTATTATTCCTGTTCACT
GTATATAATCTCACAACCAGGGGATCTCTGCGAAGATATGTACAGAGTGT
AAGAGGGAGGAAGTAGGATGTTCCCTCAGGGTCTGATCTGCTTTGCTTTG
TCTTAAAAGTCGGTGTATATTCAATTTAATTTAGTTCAAACTCTGTAGAC
TTGCCCTGTAGTACAGGTAAGAAAAGGGTTAGTCCAAGAAAAAAAAATAG
CACACAAAAGCCTCTGCTTGCTCCGTGAAGGTCGAAAGGAACCTTTTACC
AACTCTGTCTACCAGAGCCAGGGCTTTGAGGGGGAGGGCTGTCAAACATC
AATCGCGTGCCACTATAACTGCTCATGAGGACTGGGAAAGTATAAGTTCA
AAAGAAAGATATTGCCAATAGCCCTCTTTGTGTGTTTAGGGGCAAAATGG
CATCTGCTTTTATAGGAGAACAGTTTAAAAACCCCCAACTTATTTACACC
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g04.b1 MSMg01no102_g04.b1 CHROMAT_FILE:
MSMg01no102_g04.b1 PHD_FILE: MSMg01no102_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
         (493 letters)



>mm_chr3_143106392_143107284
          Length = 893

 Score =  930 bits (481), Expect = 0.0
 Identities = 490/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaactactctccctgaataatagctaactagatgcatgattttcttggtttatattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaactactctccctgaataatagctaactagatgcatgattttcttggtttatattttt 260

                                                                       
Query: 61  aaattctgatgttaatcatgacctctgtgtcgctattataatgctgataagttaaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattctgatgttaatcatgacctctgtgtcgctattataatgctgataagttaaaaact 320

                                                                       
Query: 121 tcagattttataaattataatgcaacttttacaagttatttttatgtattctaattagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagattttataaattataatgcaacttttacaagttatttttatgtattctaattagct 380

                                                                       
Query: 181 tttaatatcttttacagtctttatttttattttgtgtgtctgagtgttctgcctgcatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatatcttttacagtctttatttttattttgtgtgtctgagtgttctgcctgcatgt 440

                                                                       
Query: 241 ataactgtatacctcgtgcatgcagatcacacaagccagaagaggatgacagatcccctt 300
           ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 441 ataactgtataccacgtgcatgcagctcacagaagccagaagaggatgacagatcccctt 500

                                                                       
Query: 301 ggaactggagctagagactgttgccatatcggtgctaggaatcaaatctacctcctctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaactggagctagagactgttgccatatcggtgctaggaatcaaatctacctcctctgg 560

                                                                       
Query: 361 caaggcactcagtgctcttgactactaagccatctctctagctcatgtgttgaaatttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaggcactcagtgctcttgactactaagccatctctctagctcatgtgttgaaatttta 620

                                                                       
Query: 421 atgatgcccaggttcatggattggaaacttggtccccaactcctttttctttgcaaaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgatgcccaggttcatggattggaaacttggtccccaactcctttttctttgcaaaagc 680

                        
Query: 481 catctcccgaatg 493
           |||||||||||||
Sbjct: 681 catctcccgaatg 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no102_g04.g1 MSMg01no102_g04.g1 CHROMAT_FILE:
MSMg01no102_g04.g1 PHD_FILE: MSMg01no102_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:58 2005
         (355 letters)



>mm_chr3_143198895_143199649
          Length = 755

 Score =  648 bits (335), Expect = 0.0
 Identities = 350/355 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtagaaagccagatggctgagttggccttccctccatggtcttcatttctgcctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aggtagaaagccagatggctgagttggccttccctccatggtcttcatttctgcctttct 496

                                                                       
Query: 61  tgaaccagccatttaacagttgcagatgaagtgttgtgtgaagtgcagacatacaataga 120
           ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 tgaaccacccattaaacagttgcagatgaagtgttgtgtgcagtgcagacatacaataga 436

                                                                       
Query: 121 actcaagacctgagacatttgtatgcctcaagtcaagcatatttattattcctgttcact 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 actcaagacctgagacatttgtatgccccaagtcaagcatatttattattcctgttcact 376

                                                                       
Query: 181 gtatataatctcacaaccaggggatctctgcgaagatatgtacagagtgtaagagggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtatataatctcacaaccaggggatctctgcgaagatatgtacagagtgtaagagggagg 316

                                                                       
Query: 241 aagtaggatgttccctcagggtctgatctgctttgctttgtcttaaaagtcggtgtatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagtaggatgttccctcagggtctgatctgctttgctttgtcttaaaagtcggtgtatat 256

                                                                  
Query: 301 tcaatttaatttagttcaaactctgtagacttgccctgtagtacaggtaagaaaa 355
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 255 tcaatttaatttagttcaaactctgtagacttgctctgtagtacaggtaagaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)