Query= MSMg01no102_k01.b1 MSMg01no102_k01.b1 CHROMAT_FILE:
MSMg01no102_k01.b1 PHD_FILE: MSMg01no102_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:16 2005
(453 letters)
>mm_chr3_30770747_30771599
Length = 853
Score = 822 bits (425), Expect = 0.0
Identities = 448/459 (97%), Gaps = 6/459 (1%)
Strand = Plus / Plus
Query: 1 agctggattacaaacacacattaccaggcctggttttttt------ttatgaggttctga 54
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 195 agctggattacaaacacacattaccaggcctgttttttttctttttttatgaggttctga 254
Query: 55 ggtggaactcagaatcccctgtttacgcagcaagtactttattagaggagacatctcccc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtggaactcagaatcccctgtttacgcagcaagtactttattagaggagacatctcccc 314
Query: 115 atctcgccagattttcagattaacctgtgttggggagaatgtcagtaataggccacccct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 atctcgccagattttcagattaacctgtgttggggagaatgtcagtaataggccatccct 374
Query: 175 cagtattgttaaaggatttgcccttttgaaatggcataatttcatgtctatttttgaact 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cagtattgttaaaggatttgcccttttgaaatggcataatttcatgtctatttttgaact 434
Query: 235 gaaaggcatttgcattgtttcagttttggctttggttagatagttttggttattacaaat 294
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 435 gaaaggcatttgcattgtttcagttttgactttggttatatagttttggttattacaaat 494
Query: 295 gatgcttctggaaatgataaaatgctgctgtgtatatgtgtttgtgtgtatatgtgtttg 354
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gatgcttctggaaatgctaaaatgctgctgtgtatatgtgtttgtgtgtatatgtgtttg 554
Query: 355 tgtagattttatttttatgtctcttgggtgaatttctaaaagtatagctgtagaatcaaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtagattttatttttatgtctcttgggtgaatttctaaaagtatagctgtagaatcaaa 614
Query: 415 tttatgtttaacttttacaaacctgacaaactattttcc 453
|||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttatgtttaacttttacaaacctgacaaactattttcc 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_k01.g1 MSMg01no102_k01.g1 CHROMAT_FILE:
MSMg01no102_k01.g1 PHD_FILE: MSMg01no102_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:16 2005
(423 letters)
>mm_chr3_30895027_30895849
Length = 823
Score = 787 bits (407), Expect = 0.0
Identities = 419/423 (99%)
Strand = Plus / Minus
Query: 1 aaaggagaggaaaaactttatgataagtcacgatagaaaatgatttgggctatgctaaga 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 623 aaaggagaggaagaactttatgataagtcacgatagaaaatgatttgggctatgctcaga 564
Query: 61 actggattacttttggcagagacattagcttaaacgtttggtaatcaagtggggtaaaga 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 actggattacttttggcagagacattagtttaaacgtttggtaatcaagtggggtaaaga 504
Query: 121 tcgtttctagaatttaaagccttggcttctcacctttcgatagctcaccctaacttccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcgtttctagaatttaaagccttggcttctcacctttcgatagctcaccctaacttccaa 444
Query: 181 aatgtgggtcagcacatttgcaccttaattctgaccacccaggatccagtgcacatccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatgtgggtcagcacatttgcaccttaattctgaccacccaggatccagtgcacatccta 384
Query: 241 ttaaaaagtatcgactttggtactaactctaacacctatagtggctctctgaccatagtc 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 ttaaaaagtatcgactttggtactaactctaacacctatagcggctctctgaccatagtc 324
Query: 301 cagacttatttcatgaactctcccacggcgaaggatagatgtaaacctgatttataagac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagacttatttcatgaactctcccacggcgaaggatagatgtaaacctgatttataagac 264
Query: 361 ggaggcttcaggcctgtctgcaatgaaaggagccacctaacgaagcagtccaggcttgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggaggcttcaggcctgtctgcaatgaaaggagccacctaacgaagcagtccaggcttgcg 204
Query: 421 tgc 423
|||
Sbjct: 203 tgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
