BAC Information

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BAC

Clone NameMSMg01-102L06
Chromosome3 (Build37)
Map Location 125,776,643 - 125,913,297
singlet/doubletdoublet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102L06.T7 (MSMg01no102_l06.b1)MSMg01-102L06.TJ (MSMg01no102_l06.g1)
ACCAG317774AG317775
length763719
length of high quality
(start - end)
296 (140 - 435)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no102_l06.b1 PHD_FILE: MSMg01no102_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:22 2005CHROMAT_FILE: MSMg01no102_l06.g1 PHD_FILE: MSMg01no102_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,776,643 - 125,776,935)(125,913,009 - 125,913,297)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCC
CCCCCCCGGTAACANNNNCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAAAAGAGGATCCGCGGAATTCCAATTTACGAGAGTAGCCCTAATT
TTCAAATACAGAAGTCAATTTTATGCATTCCATTCCCCATCTAGTTAAAA
ACTAACATTGCAGCTTGACATGTTAAGAATCAGGAATTTTTCTTTAGGAA
TAAGCATGTTTACCAAGCACAGACTAATTGCTCTATAATTATTCATTTAC
GAGTGAGATTTTTACATATTTTTCTTACTTTTACTCCTTATCAGTTCCCA
AGCTAGTACCAGAGCGCATGTATTCAGTATTCAGTGCTTTAGGGTCTAAA
GTCGCCTGAAGCAATGATCCACACATTTTAATTTACATTTTTCTAATAGC
GTTGACTAAAAATATTATTCTACTCTTCAACACTCTTCATATTATTTCAT
TCTGGTGCTTTTAATCTTCTGGCTCGGTTACACAATGGCCTATCAAAGGA
TTAATAACTTCTTTGAATGGCTATTTGATGTCAGCCTGAGCTGGGGAGAA
TTATTTCACTAAGTCATCTTGGCTATCTTAAGTTGTTAACAAGAAAAAAA
TGCCTATTACTGCTAAGGAAAGTTCCAAGGATGAAAAAAGTCCCGTTTTA
GATGAGTTTCAAAAAGTTAATACATTGTGGTCAGCTTCATTATTTTCATA
ATCTATAGCACAG
ATCAATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTGCCCATGGGAAGCTCTGCA
TTTGCATTTACACATGTCAGCCAAATCATGCCCTTCTTTTGCACTTGGTG
TTTTAATTAAGGGTTCTTTACCATGAAGTGCCCATAATTCAGAGGGAATT
GGTCAGACAATGAAAATGATAAACTAATGGCAAGATATGTTTTAAGATAT
AATCTAATTATTTATCTGTCCTCATGACTTTCTTACTGAACCACATTGTG
TTTTTCTACATGAGTATTGTTATTTCTTAATAACTGAGCTTATATAGGGT
ATATCTTAATTATATATCTCACTCCCCCCCTCCCAGGATTAAAAACAATA
CTAGTCACATTCATTTCTTCCCAAAGTAAAATTAAAGATTTATTTTGGTG
TACTCCATAGGAGTGTCACAGATCTTACGATAAACGAATTTATAAATAGC
TCATTTTGTTTTGATTTTGATTTTAGCTTCTTAACTCTGTAATGTGCTGT
TTTTACTCAGATTATGTCATAACAACTCTCTGACTATTGTCTTTTATTTC
TCGTCTTATCTTGTGATCATTATATGTAGATTTTTATATACCTTACCAAT
GTTAAATATGTCCTAATTTGCATAATGAATTATATCTTACCCATTTTTCC
CCCTGCCTTCTTACTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_l06.b1 MSMg01no102_l06.b1 CHROMAT_FILE:
MSMg01no102_l06.b1 PHD_FILE: MSMg01no102_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
         (296 letters)



>mm_chr3_125776440_125777135
          Length = 696

 Score =  497 bits (257), Expect = e-145
 Identities = 284/293 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccctaattttcaaatacagaagtcaattttatgcattccattccccatctagttaaaaac 63
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | 
Sbjct: 204 ccctaattttcaaatacagaaggcaattttatgcattccattccccatttagttaaagat 263

                                                                       
Query: 64  taacattgcagcttgacatgttaagaatcaggaatttttctttaggaataagcatgttta 123
           |||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 taacgttgcagcttggcatgttaaaaatcaggaatttttctttaggaataagcatgttta 323

                                                                       
Query: 124 ccaagcacagactaattgctctataattattcatttacgagtgagatttttacatatttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccaagcacagactaattgctctataattattcatttacgagtgagatttttacatatttt 383

                                                                       
Query: 184 tcttacttttactccttatcagttcccaagctagtaccagagcgcatgtattcagtattc 243
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 tcttacttttacttcttatcagttccaaagctagtaccagagcgcatgtattcagtattc 443

                                                                
Query: 244 agtgctttagggtctaaagtcgcctgaagcaatgatccacacattttaattta 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgctttagggtctaaagtcgcctgaagcaatgatccacacattttaattta 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_l06.g1 MSMg01no102_l06.g1 CHROMAT_FILE:
MSMg01no102_l06.g1 PHD_FILE: MSMg01no102_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
         (289 letters)



>mm_chr3_125912809_125913497
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctttgcccatgggaagctctgcatttgcatttacacatgtcagccaaatcatgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctctttgcccatgggaagctctgcatttgcatttacacatgtcagccaaatcatgccct 430

                                                                       
Query: 61  tcttttgcacttggtgttttaattaagggttctttaccatgaagtgcccataattcagag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 429 tcttttgcacttggtgttttaattaagggttctttaccatgaagtgtccataattcagag 370

                                                                       
Query: 121 ggaattggtcagacaatgaaaatgataaactaatggcaagatatgttttaagatataatc 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaattggtcagacaatgaaaatgagaaactaatggcaagatatgttttaagatataatc 310

                                                                       
Query: 181 taattatttatctgtcctcatgactttcttactgaaccacattgtgtttttctacatgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taattatttatctgtcctcatgactttcttactgaaccacattgtgtttttctacatgag 250

                                                            
Query: 241 tattgttatttcttaataactgagcttatatagggtatatcttaattat 289
           ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 249 tattgttatttcttaataactgagcttgtatagggtatatcttaattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)