Query= MSMg01no106_c24.b1 MSMg01no106_c24.b1 CHROMAT_FILE:
MSMg01no106_c24.b1 PHD_FILE: MSMg01no106_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:15 2005
(796 letters)
>mm_chr3_143486834_143488031
Length = 1198
Score = 1386 bits (717), Expect = 0.0
Identities = 775/795 (97%), Gaps = 4/795 (0%)
Strand = Plus / Plus
Query: 5 gaattcacattaaactcattttaccatttcaaacaaatggaaggagacaacaattatgat 64
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattaaactcattttaagatgccaaacaaatggaaggagacaacaattatgat 264
Query: 65 cttgtcctcatttttaccaaatgtgcgtgtctattgcccacaccacattagaaaacccac 124
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgttctcatttttaccaaatgtgggtgtctattgcccacaccacattagaaaacccac 324
Query: 125 aaagcaatcagatccgggtcgactcagacagacgtgaaacagtcttttctttcacttgct 184
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 325 aaagcaatcagatctgggtctactcagacggacgtgaaacagtcttttctttcacttgct 384
Query: 185 cctgcctgtggattcttggggtcaaagcaggagtttacaagaatgctgtaaggttttcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgcctgtggattcttggggtcaaagcaggagtttacaagaatgctgtaaggttttcca 444
Query: 245 ccatcatttttgtgatttgttagaatggatgaaaatatccaaaacactcttaatgtgtcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatcatttttgtgatttgttagaatggatgaaaatatccaaaacactcttaatgtgtcc 504
Query: 305 gacggtttttttctagtcatggattttaatcttagttacctaagcattaaaccaacaggt 364
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacggcttttttctagtcatgaattttaatcttagttacctaagcattaaaccaacaggt 564
Query: 365 taaattccagaaagagagagtagactggagactgacaacagctgccacttttagaacttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaattccagaaagagagagtagactggagactgacaacagctgccacttttagaacttg 624
Query: 425 cacccctaaaacaggtgctcttctccaaggcttcccaaccactttggaaattcagattca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacccctaaaacaggtgctcttctccaaggcttcccaaccactttggaaattcagattca 684
Query: 485 agggacatgaattagtgatgatctgtgttatttcatgcatctgtgttcttaatttggtat 544
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 agggacatgaattagtgatgatctgtgttatttcatgtatctgtgttcttaatttggtat 744
Query: 545 tggaacatctgcctataaaacctggttttcaagaactgtgggtgtgataccccaagactt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggaacatctgcctataaaacctggttttcaagaactgtgggtgtgataccccaagactt 804
Query: 605 ccttgtatcaatcaggaattaaactcataggcagcatcacctacctttgattgtttagaa 664
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 805 ccttgtatcaatcaggaattaaactcataggcagcatcacctacctctgattgtttagaa 864
Query: 665 acttacaaagtgng-gggagagggagaaagggtctagcatttggtaactttctaagctgt 723
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 865 acttacaaagtg-gagggagagggagaaagggtctagcatttggtaactttctaagatgt 923
Query: 724 ttgagcttaatgaagcatttaagaaaggagatgaggaaatgtcttaccagtatttttttt 783
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 924 ttgagcttaatgaagcatttgagaaaggagatgaggaaaggtcttaccagtatttttttt 983
Query: 784 t--aaacattatatc 796
| ||||||||||||
Sbjct: 984 tgaaaacattatatc 998
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1198
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1188
Effective search space: 933768
Effective search space used: 933768
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_c24.g1 MSMg01no106_c24.g1 CHROMAT_FILE:
MSMg01no106_c24.g1 PHD_FILE: MSMg01no106_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:15 2005
(731 letters)
>mm_chr3_143586174_143587304
Length = 1131
Score = 1398 bits (723), Expect = 0.0
Identities = 729/731 (99%)
Strand = Plus / Minus
Query: 1 tatttcaaccacaaggacaaagaaaatatgaacaagaagagattgaagaaaggtctatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tatttcaaccacaaggacaaagaaaatatgaacaagaagagattgaagaaaggtctatac 872
Query: 61 agctgtgttcagtgacggcaggcgcttggaacggtgagtgctcaaagccttcaagtggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 agctgtgttcagtgacggcaggcgcttggaacggtgagtgctcaaagccttcaagtggcc 812
Query: 121 tagggtaaggagattaatggagaataggaagatacgtaaaattaagttggaatgaacatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tagggtaaggagattaatggagaataggaagatacgtaaaattaagttggaatgaacatt 752
Query: 181 aaggcagagaattaaactttggctgcataatagtttggattttaggcaacaaaatgagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaggcagagaattaaactttggctgcataatagtttggattttaggcaacaaaatgagtt 692
Query: 241 ctgtgataatggaaatctcatttaggagtaagataatgtagaataaaaaaatcacccctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ctgtgataatggaaatctcatttaggagtaagataatgtagaataaaaaaatcacccctg 632
Query: 301 aaaaggtgaatgcctgctatttcccagacccccacatatgatattactttctgccaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaaggtgaatgcctgctatttcccagacccccacatatgatattactttctgccaaatg 572
Query: 361 tagttatggaaggctgggccagtttttttttttccagaagttttgttgtgtgtttgtgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tagttatggaaggctgggccagtttttttttttccagaagttttgttgtgtgtttgtgtt 512
Query: 421 tgctttttaagttttgagagagcttctcttgctttttaggccaggttggctattaattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tgctttttaagttttgagagagcttctcttgctttttaggccaggttggctattaattct 452
Query: 481 tgaacttactgcgtccacctcagaagcttcctgtcttacactaccatacactcaactcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgaacttactgcgtccacctcagaagcttcctgtcttacactaccatacactcaactcta 392
Query: 541 aaggaagttctgaattagaaacacaagcaattgcttcttttctcccatggtatcattaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaggaagttctgaattagaaacacaagcaattgcttcttttctcccatggtatcattaca 332
Query: 601 aggattgaataagggatcatgagaaagctccagaccctggtatgccaaatgtttccttca 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 331 aggattgaataagggatcatgagaaagctccagaccctggtatgccaaatgtgtccttca 272
Query: 661 cattatctctaaagaagacaatcacagcgaagaagcatcttctaccttcccagacgtgca 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cattatctctaaaggagacaatcacagcgaagaagcatcttctaccttcccagacgtgca 212
Query: 721 cgcttctttta 731
|||||||||||
Sbjct: 211 cgcttctttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1131
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1121
Effective search space: 808241
Effective search space used: 808241
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
