BAC Information

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BAC

Clone NameMSMg01-106H08
Chromosome3 (Build37)
Map Location 4,282,645 - 4,283,241
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106H08.T7 (MSMg01no106_h08.b1)MSMg01-106H08.TJ (MSMg01no106_h08.g1)
ACCAG320540AG320541
length1,3451,330
length of high quality
(start - end)
597 (131 - 727)427 (126 - 552)
definitionCHROMAT_FILE: MSMg01no106_h08.b1 PHD_FILE: MSMg01no106_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:55 2005CHROMAT_FILE: MSMg01no106_h08.g1 PHD_FILE: MSMg01no106_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTACTCTAGTTAAATCATTGTGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGATGAGTTAATCTGGCCCCTTTAAAAATCAAAACAA
ATCCTGGAAAGTGCTTCAGACATCCTTTAAGCAACCCCATTCTATTTTGA
AGACAGGTAATATTAAAAATTAGCAAGATTCACATGAAAAGAGCTGACCA
CCCCATAAAGCATGGTACGTTCATTCATCCTCCAGTTTTATCACTAGGGT
TCCAAAGGCCATCTAAAAACTGATACAAATTATTAAATATTTGGATAATT
TCTCTAACAAAGTGCTGTTTTATGAAAAAGTAACTTAGAGTAGACTGCAT
TTATTGAAATAAAATATCTCCATGTGTTGGCACACTATTCTGTAAATTCC
TATGATTTAATACCCCGTTTCCCAAACTGTGGTGGTTCCTTTAGCAGAGA
AAATGTCTGAAATTTTTATAGAGATGATAAAAACCTTAATAAGACCATTT
GTGAAAAAGAAAGTATAGATGACACTCAATTCAAGTATATCAAATACTTA
ATATTATTAAAACAATAGTTTAAGAACAGGTTGCAAAAGTCCTAATTGTA
TAAGTATTTAGAAAGTTTAACATCTTAATCAAGTAATCACTTGCTTATAC
AATAATTGGATAGAACAAATTTTTATAATATTAAAATATTTCTATGAACT
ATTTGTAAAATTATTTTCAAATCTTACGATTGCCATTTTAATTGCCAGAA
CGAGGAAAATGATTTATCATGAATGATTATACCATATTTACATATAATTA
AATGATATAGCTATTTCATAAAGGCTCTCATTAGTAATTTTATGCACTTT
CTGATTTATGAATAACAGACCTTAATATTTTGCCGCATTTGCCTATTATA
TATGATGCCTTAAGCAAACTTTTTCAGTTTGGCCTAGCATTTGGTACTTT
CCTCCACTGGCTTCCACTTTCAAATTAAAAATTTATTTAGCCATTTCCGT
TGTAATATTAATTTTCCCTTATTTTCGTTCCCCCCTAAACTCATCCACCC
TCTATTGCATCTTAATTGTGTTCCCCCTGAACAAATGTGCTTTCTTCTCT
AACAAGGGGATTGTCAAGACCTGTTTATGTTACCGGTGGACCTCTATGGT
CTATAAATCAGTTTGGCAACCTCCTTGTGTTCCTCCATATATATAGAATA
GGACCTGGTGTCACAATATTCTTCCTTGTTTAGATAANATACTTTGGATA
TTTCTCCTTGGAACACTGCTAGTATTGTTTATAACATACTTGTACACTCT
CGGTTATCACCCTCAGACACCTGTGCTGATATAATTTGTCTCTTT
CTCTTTTCTTTTATCCATTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAACGCTTCTTGTATGTTCAT
GGGCATCTCTTCCTTCCCTTTAGGGAAGTTTTCTTCTATAATTTTGTTGA
AGGTAATTGCTGGCCCTTTCAATTGAAAATCTTCATTTTCATCTATATCT
AGTATCCTTACGTTTGGTGTTCTTATTGTGTCCTGAATTTCCTAGATGTT
TTCAGTTAGGATCTTTTTGAATTTCACATTTTCTTTATTTGTGTTTGCCC
CTGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCATCTCTTT
TATTCTGTTCCTGATGCTCGCATTTATGGTTCCTGATTTCTTTCCTAGGG
TTTGTATCTATAGCGTTGTCTCATTTTGGGTTTTCTTTATTGTGTCTACT
TCCATTTTTAGGTTTTGGACGGTTTTGTTCAGTTCCATCACCTGTTTGGT
TTTGTTTTCCTGTAATTCTTTAAGGAATTTTTGTGTTTCCTCTTTAAGGA
CTTCTACCTGTTTATCAGTGTTCTCCTGTGTTTCTTTAAGTGAGTCATTA
ATGCCCTTCCTAATGTCCTCTACCATCACCATGAGATATGATCTTGAATC
TGAATCTTGCTTTTTGCTTCTGTAGTGGTATCCATAATTGGCTGATGTGT
TCACGCTATCTTCTGTTGATGTCTGATATTTCTGCTTTTCTGTTTGCAAT
ATTCTTATGTTTTGTCTTTTCTTCCTTCCGGTAATCTTTGTTGTTCAGAT
TTTTTATTTTATCTCTGGTTCAATGACCGTTCCTCCTCTTTATTCTGTTT
ATCCTTTTGTCATTTTTCTGCCTAAACTCACTTTTTTTCATGCCTTTTAT
TCGTATCATAATATACCTCCTTTAATCAACTTTTTCCTTCTTTGTATCAA
AAGTTATTTACTATTTTCTTGGCCTTTCCATTCCTCTTTCTTCTTGTTTT
AAATATTCTAATGCCTCAAACATATGTTCTTTTTCCCATAAAAAAGTCCT
TTTCTCATTTTATTACTGCTGTTTTTCCTCTTCTAAGACGGTTTTTACTA
GTGTTCATAATCATAAAGTATTATGTTCTTCCTTCATTTTGTCTCTTGTG
TGCTTCATAAGCTCCTCTCTGTTCATAGTACTTCTCCTATTCGTATTTAG
TGTCATACATTTCTCCCTTATTTCTCTTCATCTCGCATATATTGAGTTGA
CATATGTATCTAACATATAGATGTCTGCATTTGTATTTCCTATATATCTA
TAATCATCTGATATTCTATAATAGTCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_h08.b1 MSMg01no106_h08.b1 CHROMAT_FILE:
MSMg01no106_h08.b1 PHD_FILE: MSMg01no106_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:55 2005
         (597 letters)



>mm_chr3_4282506_4283502
          Length = 997

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/597 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaccccattctattttgaagacaggtaatattaaaaattagcaagattcacatgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcaaccccattctattttgaagacaggtaatattaaaaattagcaagattcacatgaaaa 677

                                                                       
Query: 61  gagctgaccaccccataaagcatggtacgttcattcatcctccagttttatcactagggt 120
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagctgaagaccccataaagcatggtacgttcattcatcctccagttttatcactagggt 617

                                                                       
Query: 121 tccaaaggccatctaaaaactgatacaaattattaaatatttggataatttctctaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tccaaaggccatctaaaaactgatacaaattattaaatatttggataatttctctaacaa 557

                                                                       
Query: 181 agtgctgttttatgaaaaagtaacttagagtagactgcatttattgaaataaaatatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agtgctgttttatgaaaaagtaacttagagtagactgcatttattgaaataaaatatctc 497

                                                                       
Query: 241 catgtgttggcacactattctgtaaattcctatgatttaataccccgtttcccaaactgt 300
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 496 catgtgttggcacactattctgtaaattcctatgatttaatacccccttttccaaactgt 437

                                                                       
Query: 301 ggtggttcctttagcagagaaaatgtctgaaatttttatagagatgataaaaaccttaat 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtggtttctttagcagagaaaatgtctgaaatttttatagagatgataaaaaccttaat 377

                                                                       
Query: 361 aagaccatttgtgaaaaagaaagtatagatgacactcaattcaagtatatcaaatactta 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 376 aagaccatttgtgaaaaagaaagtatagatgacactcagttcaagtatatcaaatactta 317

                                                                       
Query: 421 atattattaaaacaatagtttaagaacaggttgcaaaagtcctaattgtataagtattta 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 316 atattattaaaacaatagtttaagaaccggttgcaaaagtcctaattgtataagtattta 257

                                                                       
Query: 481 gaaagtttaacatcttaatcaagtaatcacttgcttatacaataattggatagaacaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaaagtttaacatcttaatcaagtaatcacttgcttatacaataattggatagaacaaat 197

                                                                    
Query: 541 ttttataatattaaaatatttctatgaactatttgtaaaattattttcaaatcttac 597
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttttataatattaaaatatttctatgaactatttgtaaaattattttcaaatcttac 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)