BAC Information

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BAC

Clone NameMSMg01-106P17
Chromosome3 (Build37)
Map Location 60,018,777 - 60,019,110
singlet/doubletsinglet
Overlap genenone
Upstream geneP2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1
Downstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106P17.T7 (MSMg01no106_p17.b1)MSMg01-106P17.TJ (MSMg01no106_p17.g1)
ACCAG320921AG320922
length1,2611,294
length of high quality
(start - end)
680 (89 - 768)329 (133 - 461)
definitionCHROMAT_FILE: MSMg01no106_p17.b1 PHD_FILE: MSMg01no106_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:10 2005CHROMAT_FILE: MSMg01no106_p17.g1 PHD_FILE: MSMg01no106_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCCTTTTNNNATTCATTGCGCGCTAACGACTCCTATANGGAGAGGA
TCCGCGGAATTCTGTAGAATTCTACCACCCCTTTAAGGAATAAATAATTC
AGTCCTCAAATTATTCCAAACGCCTTGAAAAGATATTTTCTAAAATCATT
TTGTGAGTACTGTTTTACCTTGATACCCAAACCAGATAAAACATCACATA
TGCACATGCACATGCACACACACACACACAAACACACACACACATGCACA
TACACAAAGAACATTACATAGTAATACCTTAATTAATAGGAGGCGCCCTT
GGTCCTGTGAAGGATCAATGCTCCAGTATAGGGGAATGCCAGGACAGGGA
AAGGGGAGTGGGTGAGTTGATGAGCAGGGGGAGGGGGTCGTGGGATTGGA
AGTGGTTCGGAGGGGATACCATGAAAATGGATAACATTTGAAATATAAAT
AAGGAAAATATCTAATAATAAAAGAAATATCCAACAGAAATAGATGTGAA
AATTCTCAACAAAATAAAGAGTCCAGGATTATACTTTTAAAAGATCATTC
ATAATCACCAACTGGGCTTCATTCTAGTGATCGAGGAAAGGTTCAACATA
GAAATCAATAAATGCAATCATCAAAGTGATTGATTGAAAGACAAATCACA
TTATTATCTCAATAGACAAAAGTCCTTTGGAAAAAAATCTAGTGTACATT
TTTGGTAAATGCTATGGCAGTGTTAGGATGAAGAACGTATATTTTAATGT
AGTAAAGGCTATATATAATCTATAGCCAACTTTGTACTACATCTTTCAAG
CTCATAGCATTTCTACTAAAAACAATACCAATATATTTAGTGTCCACTCT
CTCTACATTCTTTAAATAGGTATTTGGAGTTTTGGCTAATTCTACCAAAA
GGTAAAACAAAGGGATTATAAAAAGAAGTTGAACAAACATATTTTTTCTT
TTTTTCTTTGAGAATAAATTGATTCTGAATATTAAAAAACCTAAGGAAAA
TTGAAAATCTTTTCAGCCAATAAAGATTATTTATCGTAATAATGGGGAAT
TATAAACCTTCATATCCTATATCCTCCAGTCTTTTATACTTTCCCTAGGT
CCCAACTTTTGAATTTATAAAATCCAAAATAACACTTCCCCTTATAATTA
AACCCTCCTACAAAAGCCCATTTATGGGAATAACCTTATTGGTGTAACCT
TTATATAAATATTTTATAAGCGCCCCTCTTAAAATAAAATATTTTTCTCC
TTTTACTAAAA
NNNTTATTATTTTTNNNGTGCAGTGAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTGGTTACATCTGTGCCC
CATTTTTAAATGGGGTTATCTCTTTTACTGGAGTCTAGCTTCTTGAGTTT
TTTGTAAGTATTGGAAATTAGTACCCTATCGGATTTAGGATTGCCCAATT
GTGATTAAAAACTGCATGGTACTGGTACAATGACAGACGGGTAGATCAAT
GGAATAGAATTGAAGACCCAGAAATGAATCAACACACATATGGTCACTTG
ATCTTTGACAAAGGAGCTAAAACCATCCAGTGGAAAAAGACAGCATTTTC
AACAGAACTTCTCAGGGTCCAACTGTCTCTGTGATCCTGTGATAGTGTGA
TCCTATGATCCTTTTTTTGTTAGAGAACCTGGGAGTTAAGCTTCCTCTGG
GTTTTGTGGGACTTGTTGTGCCCCCCATGACCAAGCTATGCTCAGGGCAC
TAAATCAGAGTGGAAGGAAACTGTGCCACTGACCAGGCCGGGGTTCCTGC
ATCCCTGGAGGTCCCAGGAACTCCCAGTGTTGGGGTGAATGTTGTGACCT
CCTTCTCTCCCATGATCCTGGGCATGTTAGAGCCTCCTCTGGGTACTGTG
TTGTTGTTTGCAGAGCCAGTGGCCAAGGTCTACTCTGATCATCAGTTTTC
ACCCTAAGACCAGTTTTTCTTTATATTTTTACTACCAATAGCCTTCTTTC
TATATTTTTCTATCATGGCATAAATTTTATTATATTATGTACAATAAAGA
TGCTTGTTTTTATTTTGCCTCTTTTCCATTTTTAGTCTTTACTTGTATTA
ATATTCTTAGGTTATCCTCCTTCTCTCTTGGGTTTTAGGCTTTTTTATTG
CTTGGATGCTCTCCCATCCTTCAGGTTGACTCCGTTCTTGTTTGTTTTTG
TTGCCACTTGTTTGAATTTTCTCCCTTTTTTCTTTGGACTGCATTATATT
CCACTGGGGTATTACAAATTTTCTCTATATTCTTCTATCTTAGGCGTTAT
CCTTTCTCTCCTCTGATTTATATTTCTATTAGTAAATATTTTATTTTTGA
TATTGTCCTATTGTTTTTTTTTTCTAGTCCTTCCTTCTCTTTCTTTATAT
AGTCCATAGATCTGTTTCCTGGCAATTCTTTACTTTTCCCTCGTTTTGTT
CCTCTCTTGCTCCTCTTTATCTTAATTTACTATCTTTTCTTAGTGCTTTC
TGGCTATTTTATCTTCTACTATTTCTACTTTTTCGTCTATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_p17.b1 MSMg01no106_p17.b1 CHROMAT_FILE:
MSMg01no106_p17.b1 PHD_FILE: MSMg01no106_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:10 2005
         (680 letters)



>mm_chr3_60018777_60019855
          Length = 1079

 Score =  594 bits (307), Expect = e-174
 Identities = 328/335 (97%), Gaps = 1/335 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataaataattcagtcctcaaattattccaaacgccttgaaaagatattttctaaaatca 60
           |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||
Sbjct: 334 aataaataattcagtcctcaaattattccaaatg-gttgaaaagatattttctaaaatca 276

                                                                       
Query: 61  ttttgtgagtactgttttaccttgatacccaaaccagataaaacatcacatatgcacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttttgtgagtactgttttaccttgatacccaaaccagataaaacatcacatatgcacatg 216

                                                                       
Query: 121 cacatgcacacacacacacacaaacacacacacacatgcacatacacaaagaacattaca 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 215 cacatgcacacacacacacacaaacacacacacacatacacatacacaaagaacattaca 156

                                                                       
Query: 181 tagtaataccttaattaataggaggcgcccttggtcctgtgaaggatcaatgctccagta 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tagtaataccttaattgataggaggcgcccttggtcctgtgaaggatcaatgctccagta 96

                                                                       
Query: 241 taggggaatgccaggacagggaaaggggagtgggtgagttgatgagcagggggagggggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  taggggaatgccaggacagggaaaggggagtgggtgagttgatgagcagggggagggggt 36

                                              
Query: 301 cgtgggattggaagtggttcggaggggataccatg 335
           |||| ||||||||||||||||||||||| ||||||
Sbjct: 35  cgtgagattggaagtggttcggaggggaaaccatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space:   716230
Effective search space used:   716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)