BAC Information

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BAC

Clone NameMSMg01-108F24
Chromosome3 (Build37)
Map Location 15,679,467 - 15,680,099
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1, LOC668101
Downstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108F24.T7 (MSMg01no108_f24.b1)MSMg01-108F24.TJ (MSMg01no108_f24.g1)
ACCAG321839AG321840
length690718
length of high quality
(start - end)
636 (48 - 683)367 (78 - 444)
definitionCHROMAT_FILE: MSMg01no108_f24.b1 PHD_FILE: MSMg01no108_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:13 2005CHROMAT_FILE: MSMg01no108_f24.g1 PHD_FILE: MSMg01no108_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:13 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAACTTTTCAGATAATTTTAAAGTTACTCAGTTTTCCTGTTA
CTTATTATACACAATACTAGATCTTTCCATAGGCATTTTGTATTTTAACA
CCTCTAGTAATTTAAATCAATTTGAAGAACCACTTCAAGTATTGGCAACT
ACCTAAGATTTTGGGGATTCCCATAAGACCCTTTTGAGCAAAAACAAAAT
TATATGTAACTCAACTCAACTTGTTACTGGAAGCTTCATTTGCTGACAAG
ATATGGCCATTTTGATGCAACAATTTAGTAATTTCATTTGGATTTTCTTC
TTGTATATGATTTAGGATGCTTCTCCTGTATTTGGTTCCCATACTATCCC
TCAAATGACTTAATTTTCACTGTGTCTCCCTATATTCACTCCTTCATTAC
CCTTTCTCCTCCCTCTTCCCATATGATCTTCTTGTTCTTACCACCCTATT
TATCCATAACTATATTTCCTATTTCATTCTGCAGTACCCCCTTGTTCTTG
TTGTTGTTACAACAGATTAAGAGCTTTAACTTCTATGGTTTTATAGACTA
TGGCTTGTGTATTATTTACATTGCTGACTTAAGAGATAACATACACATAT
ATGGGAACAGATACTATCTTTGTTGTGCTAGATTTGGGAA
TTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACTTGGTTTACTGACTTTT
CTGAATGCTATGTAGGTGCTACCCAGAAGTGGACAGCTCCAGCATTACAA
CCCCTATCTGGGTCAAGCCTGAAAAATACAGGTGAAAGAAAATCTTCACA
GTGGACAGAAGTCCAGGCAGTACAAATGGTTTTAAACTTTGCTTGGAAGA
AGAAGGGTTCAGATGTACAATTATTCAGTGCCTCATGGGCTATAGCCAAT
GGATTGGCTGGCTGGTTAGGGACTTACGAATATCATGATTGGAAAATTTG
TGAGGAAAGACATTTGGGTAATTAGTATGTAAATATATCTCTCCAAATGG
TTAAAGCTCAACAATATTGACTTACACTTACCAAGGTTGACCTGGCTACA
GCTGCTGCTGAATGTCATATCTGCCAACAGCAGAGACCAACACTGAATCC
CAGATATGATGCCATTCCTTGAGGTGACCAGTCAGCAATCTGTTGGCAGG
TTGATTATATTCTACCACTTCCTCCGTGGACAGGACAACCGTTTCTTCTT
ATTGAAGCACCACACTTATTCCGGCTATGTATTTCCCCTTCCTGCATTTA
ATGCTTCTCCCCAAACCACCATCCATGGACTTACAGATACCTTACTCACT
GCCATCTTATTCCACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_f24.b1 MSMg01no108_f24.b1 CHROMAT_FILE:
MSMg01no108_f24.b1 PHD_FILE: MSMg01no108_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:13 2005
         (636 letters)



>mm_chr3_15679259_15680294
          Length = 1036

 Score = 1040 bits (538), Expect = 0.0
 Identities = 608/638 (95%), Gaps = 15/638 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcagaacttttcagataattttaaagttactcagttttcctgttacttattatacacaat 68
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcagaactttttagataattttaaagttactcagttttcctgttacttattatacacaat 268

                                                                       
Query: 69  actagatctttccataggcattttgtattttaacacctctagtaatttaaatcaatttga 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 actagatctttccataggcattttgtattttaacacctctagtaatttaaatcaatttga 328

                                                                       
Query: 129 agaaccacttcaagtattggcaactacctaagattttggggattcccataagaccctttt 188
           ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 329 agaaccacttcaagttttggcaactgcctaagattttggggattcccataagacccattt 388

                                                                       
Query: 189 gagcaaaaacaaaattatatgtaactcaactcaacttgttactggaagcttcatttgctg 248
           ||||||||||| |||||||||||||||||||     ||||||||||||||||||||||||
Sbjct: 389 gagcaaaaacataattatatgtaactcaact-----tgttactggaagcttcatttgctg 443

                                                                       
Query: 249 acaagatatggccattttgatgcaacaatttagtaatttcatttggattttcttcttgta 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaagatatggccattttgatgcaacaatttagtaatttcatttggattttcttcttgta 503

                                                                       
Query: 309 tatgatttaggatgcttctcctgtatttgg----ttcccatactatccctcaaatgactt 364
           ||||||||||||||||| | ||||||||||    ||||||||||||||||||||||||||
Sbjct: 504 tatgatttaggatgcttttactgtatttggatagttcccatactatccctcaaatgactt 563

                                                                       
Query: 365 aattttcac-tgt-gtctccct----atattcactccttcattaccctttctcctccctc 418
           ||||||||| ||  | | |  |    ||||||||||||||||||||||||||||||||||
Sbjct: 564 aattttcacctggagacacagtgaaaatattcactccttcattaccctttctcctccctc 623

                                                                       
Query: 419 ttcccatatgatcttcttgttcttaccaccctatttatccataactatatttcctatttc 478
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcccacatgatcttcttgttcttaccaccctatttatccataactatatttcctatttc 683

                                                                       
Query: 479 attctgcagtacccccttgttcttgttgttgttacaacagattaagagctttaacttcta 538
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 684 attctgcagtacccccttgttcttgttgttgttacaacacagtaagagctttaacttcta 743

                                                                       
Query: 539 tggttttatagactatggcttgtgtattatttacattgctgacttaagagataacataca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tggttttatagactatggcttgtgtattatttacattgctgacttaagagataacataca 803

                                                 
Query: 599 catatatgggaacagatactatctttgttgtgctagat 636
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 804 catatatgggaacagatactatctttgttgtgctagat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)