Query= MSMg01no108_i02.b1 MSMg01no108_i02.b1 CHROMAT_FILE:
MSMg01no108_i02.b1 PHD_FILE: MSMg01no108_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:23 2005
(612 letters)
>mm_chr3_152371993_152373004
Length = 1012
Score = 1075 bits (556), Expect = 0.0
Identities = 595/608 (97%)
Strand = Plus / Plus
Query: 5 gaattctcttaataactcagtagaatttccctttctcaaaatgctaaatttattcacatc 64
||||||||| ||||| ||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 205 gaattctctcaataattcagtagaattcccctttctcaaaatgctaagtttaatcacatc 264
Query: 65 ttaaaatctttcatgtgaagtaacatgttctcgggtttacagggtccgtccatatctgta 124
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct: 265 ttaaaatctttcatgtgaagcaacatgttctcgggtttacaggatccgtccatatctgca 324
Query: 125 tggagccattgtcctgtttgctatgacgtccttacggtaaatttctacaaagaatactca 184
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggagccattgtcctgcttgctatgacgtccttacggtaaatttctacaaagaatactca 384
Query: 185 ttcctctgtctcttctccccaggatcctcctatggctggatagtcactttgcactgctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcctctgtctcttctccccaggatcctcctatggctggatagtcactttgcactgctgt 444
Query: 245 tataaaaacactatcaccaaggcgacttatagaaagaagatggcttaagtttcccgggga 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tataaaaacactattaccaaggcgacttatagaaagaagatggcttaagtttcccgggga 504
Query: 305 aagtctgtaacatcagaaaggcatgtctgtagtcagctagaaccacacacaaactcagag 364
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 505 aagtctgtaacatcagaaaggcatggctgtagtcatctagaaccacacacaaactcagag 564
Query: 365 agaaactacatgtcgggcaagatcataagctgtcaaagctctccccaccaagggacgtgc 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaactacatgtcgggcaaggtcataagctgtcaaagctctccccaccaagggacgtgc 624
Query: 425 ttcctccagcaatgctgaacctccccagacaccaccaccaactggagatcaagtgttcaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcctccagcaatgctgaacctccccagacaccaccaccaactggagatcaagtgttcaa 684
Query: 485 atatctgagctttgcggggacatttctcatttgaaaccccctccccagaagagtcattca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatctgagctttgcggggacatttctcatttgaaaccccctccccagaagagtcattca 744
Query: 545 ggatgccttacagtttacaggacatgctgtaatcaaagtaactattaaatgttcccaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggatgccttacagtttacaggacatgctgtaatcaaagtaactattaaatgttcccaaga 804
Query: 605 tttctgag 612
||||||||
Sbjct: 805 tttctgag 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_i02.g1 MSMg01no108_i02.g1 CHROMAT_FILE:
MSMg01no108_i02.g1 PHD_FILE: MSMg01no108_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:24 2005
(439 letters)
>mm_chr3_152544332_152545171
Length = 840
Score = 717 bits (371), Expect = 0.0
Identities = 417/443 (94%), Gaps = 19/443 (4%)
Strand = Plus / Minus
Query: 1 caggaccagctgtgtacagttggatgcaggctagcact-gtgggaagatggacatgcagc 59
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 524 caggaccagctgtgtacagttggacgcaggctagcactggtgggaagatggacatgcagc 465
Query: 60 cagccagctgattttctatcctcctttgctccggcattagtgtctccacagacttcccag 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 464 cagccagctgattttctatcctcctttgctctggcattagtgtctccacagacttcccag 405
Query: 120 tgagaagagagcctgccgcagtatgaggttgaactcatacctgggccctgccgcaggtga 179
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 404 tgagaagagagcctgccgcagtgtgaggttgaactcatacctgggccctgcagcaggtga 345
Query: 180 gaccaccaccaatgggcaagtggaaaaggcagcttctgccaggagacctgtcttttagaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaccaccaccaatgggcaagtggaaaaggcagcttctgccaggagacctgtcttttagaa 285
Query: 240 tctgtaccaggatgtcagagtttccagaggggtcagtgccagggatgtcacatgaatacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tctgtaccaggatgtcagagtttccagaggggtcagtgccagggatgtcacatgaatacc 225
Query: 300 cagagacccttatggcctgagaagtctgggtaaactaaggaagaggcagggacccacaaa 359
|||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct: 224 cagagattcttatggcctgagaag---------------gaagaggcaggggcccacaaa 180
Query: 360 gtacagattgcaaagtaaaggaatttttgtttgtttcatgatagatgactttgaaacaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 gtacagattgcaaagtaaaggaatttttgtttgtttcatgatagatgactttgaaacaaa 120
Query: 420 aagagac---ataaacttggaaa 439
||||||| |||||||||||||
Sbjct: 119 aagagacgacataaacttggaaa 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 840
Length adjustment: 9
Effective length of query: 430
Effective length of database: 831
Effective search space: 357330
Effective search space used: 357330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
