Query= MSMg01no108_l12.b1 MSMg01no108_l12.b1 CHROMAT_FILE:
MSMg01no108_l12.b1 PHD_FILE: MSMg01no108_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:40 2005
(287 letters)
>mm_chr3_100654284_100654970
Length = 687
Score = 480 bits (248), Expect = e-140
Identities = 283/308 (91%), Gaps = 21/308 (6%)
Strand = Plus / Plus
Query: 1 cgccaccttgagcccggtgtgaaattccctaactcgactagatttcgattttgatggaag 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cgccaccttgaccccggtgtgaaattccctaactcgactagatttcgattttgatggaag 239
Query: 61 tctgagaaaacgtctgccaggagtctgtgacttgcatgagctacttggagggttgcctgg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 tctgagaaaacgtctgccaggagtctatgacttgcatgagctacttggagggttgcctgg 299
Query: 121 ataggaaaaggctcagcaggcccagtcatcctggcctcttttcttctgaagccctg---- 176
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataggaaaaggctcagcagccccagtcatcctggcctcttttcttctgaagccctgggct 359
Query: 177 -----------------aacgttcctgagaggctcaggcccagggtctgccagaactgat 219
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtctgctacagacactgaacgttcctgagaggctcaggcccagggtctgccagaactgat 419
Query: 220 gtattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatagctaaa 279
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 420 gtattttattaaaagatgagagtatctttttgtccttgtttcaaataagatatacctaaa 479
Query: 280 gagtggat 287
||||||||
Sbjct: 480 gagtggat 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no108_l12.g1 MSMg01no108_l12.g1 CHROMAT_FILE:
MSMg01no108_l12.g1 PHD_FILE: MSMg01no108_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:40 2005
(580 letters)
>mm_chr3_100729524_100730503
Length = 980
Score = 955 bits (494), Expect = 0.0
Identities = 532/548 (97%), Gaps = 8/548 (1%)
Strand = Plus / Minus
Query: 38 catcaggaacagaaggaaacttcccaaaggaactgaacactggtctaaaggagccatttc 97
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 980 catcaggaacagaaggaaacttcccaaaggaaccgaacactggtctaaaggagccatttc 921
Query: 98 taggtggacctggtgatgcacatctttaaacctggcagaggcaagtgcatctctctaagt 157
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 920 taggtggacctggtgatgcacatctttaaacccggcagaggcaagtgcatctctctaagt 861
Query: 158 ttaaggccaatctgttccacatagttccaggtcagccagagct---ata--cagtgagac 212
||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 860 ttaaggccaatctgttccacatagttccaggtcagccagagctgtgttaagcagtgagac 801
Query: 213 cctgtcttaacaacaaaagcaaaggagacaaacccgaacaaaccccatcaacctaccaaa 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cctgtctt---aacaaaagcaaaggagacaaacccgaacaaaccccatcaacctaccaaa 744
Query: 273 tcctttcaactaccaatggcatagagtttgtgtgaaccaaaatgataaggaggaaaggaa 332
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 743 tcctttcaactaccaatggcatagagtttgtgtgaaccaaaatggtaaggaggaaaggaa 684
Query: 333 ggcatgactgccttcccactcctctgtaacccaccacacagcagccaagcacgaggagct 392
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 ggtgtgactgccttcccactcctctgtaacccaccacacagcagccaagcaccaggagct 624
Query: 393 gcggtgtgcgcctctgagcaggtagattctgccttgctctagtcagtgccgttatctcct 452
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcggtgtgagcctctgagcaggtagattctgccttgctctagtcagtgccgttatctcct 564
Query: 453 gtgggcacagccaggttctaacttccccaaagcaaagcctgatcctgaaggttcttggga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgggcacagccaggttctaacttccccaaagcaaagcctgatcctgaaggttcttggga 504
Query: 513 gcttctattttctgaagtacaaaaggttcaagcctacccccagtattaataactgcagcc 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttctattttctgaagtacaaaaggttcaagcctacccccagtattaataactgcagcc 444
Query: 573 tgcccaga 580
||||||||
Sbjct: 443 tgcccaga 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
