BAC Information

Click to search

BAC

Clone NameMSMg01-108P04
Chromosome3 (Build37)
Map Location 146,353,218 - 146,353,665
singlet/doubletsinglet
Overlap geneGm1652
Upstream geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik
Downstream geneLOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108P04.T7 (MSMg01no108_p04.b1)MSMg01-108P04.TJ (MSMg01no108_p04.g1)
ACCAG322257AG322258
length719704
length of high quality
(start - end)
320 (77 - 396)451 (80 - 530)
definitionCHROMAT_FILE: MSMg01no108_p04.b1 PHD_FILE: MSMg01no108_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:58 2005CHROMAT_FILE: MSMg01no108_p04.g1 PHD_FILE: MSMg01no108_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGCCGCTATACGACTCCTATTTCGAGAAATCCGCGGAATTCCCC
TAGTTCCGGAGAAAGAATAAGAAAGTCAGATATAATAGAATAATTATGCA
CACCAAGGCCAGCTGAAAAGCAGTCATGCACAAATGAAATCTATACAGCT
GTTTGTGCAGGGCTGAGGTTAGGAGAAATGTAAACAACTGTTTTTTTTAC
AAAGAGCTGCCGAGGGCTACTGGGATGTCTCCATCCTGGCCTACTGCAGG
CAGTCTCTTATTTCAGATGGCAGGTACCCTGGAGGCATGTGACTCCTGCT
TCTCAGGGTCCCAGATACCATCCTTTTTTACAAGGAGCTGTCTCAGGCTT
CTGAAGTGTCTCTATCCCAGCCTGCTGTGGGCAGTCCCTGTCATGGCATG
CTGCTCCCAGCATTCTTTGTTTCTAATTGGTTGATTTTAGACCCCAGTTT
GGCTACTTCCTGCCTTCTATTCCTCTTGGGTGTGTTTTGCTTCTTTTTGT
TCCAGAGCTTCCAGGTGTACTGTCCAGCTGCCTGCATAGGATCTTCTTCA
ATTTCTTTGTGCAGGCTCTTAGCGCTATGAAATTCCCCTTTCTTGTATCC
CCTTAAGTTAGGCCGTGCTATTCCCCCCTTCTCACTGGACTCCTCAACAG
ACCTTCATTTCTTTCACTTCTCCCCCGACCAAGCTTTCCCTTGAGCTCAG
AAATGCTCACTTTCTACGA
TTTTTNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAACCACAAAGTTAGGAA
GCACAAAATCCTGGGCTGGGAACAACTTTGAGTCTGTTTAATACATAAAA
CTACAATTAAATGGGTGGCATTTAATTCATAAAATTAAGTGTAATTTGTA
ATCCTGAAGAGAAAACTTGCATAATATAAAGAAAGCTATTTTGATGCTAA
TGGGCTAGAAGGTGGCCACCCTTTGCTCTACTGATTGACTGGGGTGGAGT
CATCTTGGAGCATCTCTTTATTAATGCAAGGATATTACTTGGATCAGACA
TGACACTTGATTGCCGCAAAATTGTTTGATGAAAAGTCTTCTAAAAACCT
CTTAATAGGGGGCTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGAG
CCAGGCGGTGGTGGCGCACACCTTTAATCCCAGCGTTCGGGAGGCAGAGG
CTGGCGGATTTCTGAGTTCGAGGCCAGTCTGTTCTACAAATTGAGTTCCA
GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACA
AACAATCAAACACCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCC
CAGCAACCACATGGTGGCTCACAACCATCCATAATGAGATCTGGTGCCCC
TCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_p04.g1 MSMg01no108_p04.g1 CHROMAT_FILE:
MSMg01no108_p04.g1 PHD_FILE: MSMg01no108_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:58 2005
         (451 letters)



>mm_chr3_146353137_146353987
          Length = 851

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaaccacaaagttaggaagcacaaaatcctgggctgggaacaactttgagtctgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aggaaaccacaaagttaggaagcacaaaatcctgggctgggaacaactttgagtctgttt 470

                                                                       
Query: 61  aatacataaaactacaattaaatgggtggcatttaattcataaaattaagtgtaatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aatacataaaactacaattaaatgggtggcatttaattcataaaattaagtgtaatttgt 410

                                                                       
Query: 121 aatcctgaagagaaaacttgcataatataaagaaagctattttgatgctaatgggctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatcctgaagagaaaacttgcataatataaagaaagctattttgatgctaatgggctaga 350

                                                                       
Query: 181 aggtggccaccctttgctctactgattgactggggtggagtcatcttggagcatctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggtggccaccctttgctctactgattgactggggtggagtcatcttggagcatctcttt 290

                                                                       
Query: 241 attaatgcaaggatattacttggatcagacatgacacttgattgccgcaaaattgtttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attaatgcaaggatattacttggatcagacatgacacttgattgccgcaaaattgtttga 230

                                                                       
Query: 301 tgaaaagtcttctaaaaacctcttaatagggggctagagagatggctcagtggttaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgaaaagtcttctaaaaacctcttaatagggggctagagagatggctcagtggttaagag 170

                                                                       
Query: 361 cactgactgagccaggcggtggtggcgcacacctttaatcccagcgttcgggaggcagag 420
           |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||  ||||
Sbjct: 169 cactgactgagctaggtggtggtggcgcacacctttaatcccagcgttcaggagatagag 110

                                       
Query: 421 gctggcggatttctgagttcgaggccag 448
           ||||||||||||||||||||||||||||
Sbjct: 109 gctggcggatttctgagttcgaggccag 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)