CCGTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTATCAGACCCCTGAGGAATGACTGAGAGCAATGTTCCTCA
AGCCATTTATGAAATAAAAAGGGAAGGACCAGGAATACTTCTGGATTTAT
TCAATAAAAAAATCTACATTTTTCTGGGACCAAAACAAGATAAGAAAATA
ACAGAAAAAGAGACTATTGACCAATTTCTTTGATGAGCATAGACAAAAAA
GTCAATAAAATACCTGCAAACCACTAAACAATAAACTAAAAATATCAGGT
TTATATTTGACCAAAGCATTTTGAATTCAGAAAGGAGGAAGATTTGTAAA
TCAGAGTGAGAGATGCTACCTGAAATGCTTAAGTGGAAATAATTGCAGCA
CTTGCATCTTTCTACATATATGTATGTATCCATGTATGTATGCAGTGTAC
AGGTTTGTGTATACATACAGGTGCATATGCAAATACATGTTGGGGTTAAT
GCTATGTGAAGACCAGATGTAGGTCAGTAATGTCTTCCTCTAAGCCAATA
GTTCCCAACCTTCCTAATGCTATGACACTTTATAGTTCCCCACGTTGTGG
TGAGCCTCAACCATAAAATTTTCATTGCTATTTCATAACTATAAGTCTGC
TACTATTATGGCTCGTAATTTTCAACAGCAACCCCTATGAAAAAGTCATC
TGACCCCCAAAAG

NNNTTACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTTGCAGGCAAATGG
ATAGATCTAGAAAATATCATCCTGTGTAAGGTAACTGAGTCACAAAAGAA
CACACATTGTATGTACCCACTGATAAGTGGATATTTGGCAAAGTGTGTAG
AATACCCATGATACAACTCATGGATCACATAAAGCTGAAGAGGAAGGAAT
GGATGCTTCAGACATACTTAGAAGGGAGAACAAAATAATCAAGGAATGTA
GAGGGTAGTAGGAACTTGGGAGGAAGAAAAAAGGAGGGGGGAAAAGAGGG
GAAGAATCAGGTATGGGGAGGAGATCAATGTACAGAGTGTTAGGAAATTG
AACAGAGGTGTGTAGCAATGGGCATGGCTAATTAGGTGTAGCATTCACAA
AGTACCAGATTTCAGGAAAGCAAGAGCCTCCCAGGACTCCATGGGAATGA
CATTACGTGAAATACCCCATAATGAGCATGAAAAACCTGTTGATACCATA
TTCAGAGGTTGGTCATGGCCCCCATATTGAAGGACGGCGACATCAATCCA
TTCTCCTTATATAACCCAAATTCGCTCCTGTTTAAATCTTATTCCTTAAT
ACTACTATTTTTATTTTGATGATAATGCCTATTATAGACTGCTTCCTCTG
TCTATTCCTCCCCCAACA

Query= MSMg01no109_b23.b1 MSMg01no109_b23.b1 CHROMAT_FILE:
MSMg01no109_b23.b1 PHD_FILE: MSMg01no109_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:13 2005
         (589 letters)



>mm_chr3_133568335_133569323
          Length = 989

 Score = 1025 bits (530), Expect = 0.0
 Identities = 576/592 (97%), Gaps = 5/592 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaatgactgagagcaatgttcctcaagccatttatgaaataaaaagggaaggaccagg 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 771 aggaataactgagagcaatgttcctcaagccatttatgaaataaaaagggaagga-gagg 713

                                                                       
Query: 61  aatacttctggatttattcaat-aaaaaaatctacatttttctgggaccaaaacaagata 119
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 712 aatccttctggatttattcaataaaaaaaatctacatttttctgggaccaaaacaagata 653

                                                                       
Query: 120 agaaaataacagaaaaagagactattgaccaatttctttgatgagcatagacaaaaaagt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 agaaaataacagaaaaagagactattgaccaatttctttgatgagcatagacaaaaaagt 593

                                                                       
Query: 180 caataaaatacctgcaaac--cactaaacaataaactaaaaatatcaggtttatatttga 237
           |||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 592 caataaaatacctgcaaaccacactaaacattaaactaaaaatatcaggcttatatttga 533

                                                                       
Query: 238 ccaaagcattttgaattcagaaaggaggaagatttgtaaatcagagtgagagatgctacc 297
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 532 ccaaagcattttgaattcagaaaagaggaagatttgtaaatcagaatgagagatgctacc 473

                                                                       
Query: 298 tgaaatgcttaagtggaaataattgcagcacttgcatctttctacatatatgtatgtatc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgaaatgcttaagtggaaataattgcagcacttgcatctttctacatatatgtatgtatc 413

                                                                       
Query: 358 catgtatgtatgcagtgtacaggtttgtgtatacatacaggtgcatatgcaaatacatgt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catgtatgtatgcagtgtacaggtttgtgtatacatacaggtgcatatgcaaatacatgt 353

                                                                       
Query: 418 tggggttaatgctatgtgaagaccagatgtaggtcagtaatgtcttcctctaagccaata 477
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 352 tgggggtaatgctatgtgaagaccagatgtaggtcagtagtgtcttcctctaagctaata 293

                                                                       
Query: 478 gttcccaaccttcctaatgctatgacactttatagttccccacgttgtggtgagcctcaa 537
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttcccaacctccctaatgctatgacactttatagttccccacgttgtggtgagcctcaa 233

                                                               
Query: 538 ccataaaattttcattgctatttcataactataagtctgctactattatggc 589
           |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 232 ccataaaattttcattgcta-ttcataactataagtctgctactattatggc 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)