BAC Information

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BAC

Clone NameMSMg01-109C22
Chromosome3 (Build37)
Map Location 46,315,393 - 46,315,677
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433580, LOC671801, EG241989
Downstream geneLOC545517, LOC383849, LOC383850, LOC100039426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109C22.T7 (MSMg01no109_c22.b1)MSMg01-109C22.TJ (MSMg01no109_c22.g1)
ACCAG322431AG322432
length711740
length of high quality
(start - end)
480 (69 - 548)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no109_c22.b1 PHD_FILE: MSMg01no109_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:18 2005CHROMAT_FILE: MSMg01no109_c22.g1 PHD_FILE: MSMg01no109_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGCCCCGTTATTTCTTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTATCTCTTGTACCCTC
TTTTTAATAGTGTTATTTGGTTCTCGAGTCTAATTTCTTGAGTTCTTTGT
ATATATGAGATATTAGCCCTCTATCAGATGTAGGACTGGTAAAGATCTTT
TTCCTATCTGTTGGTTGCCTTTTTGTCTTCTTGACAGTGTCCTTTGCCTT
ACAGAAACTTTGCAATTTTATGAGGTCCACTTTGTCAATTCTTGATCTTA
GAGCATAAACCATTGGTATTCTGTTTAGGAATGTGTCCCCTGTGTACATG
TGCTCGAGGCTTTCTCTTCTATTAGATTCAGTGTATCTGGTTTAATATGG
AGGTCTTTAATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAATGG
GTTGATTTGCATTCTTCTACATGTTAACCACCAGTTGAGCCAGCAACATT
TAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAG
ATCAAGTGAGCATAGGTGTGTGGGCTCATTTCTGGGTCTTCAATTTTATT
CCCTTGATCTACTTGCCTGTCACTGTACCAATGCCATGCTCTTTTATCAC
TATTTCTCTGTACTACAGCTTAAGGTCAGGGATGCTGATTCCTCCAAAAG
ATCCTAATATA
NCCCCGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGACTACTCAAGTAGAAGG
CACCTCCAGCAGTGCTGTTCCTTACAAGCTTTGGAAGCAAAAGATACTGC
TGTCTTTGGGCAGCAGACAGGTGAGCAATAGACGTGGTTATGTTTTGTTC
ATAACTCAGTATCACTTGGAGGGTAGTGGCTAGGTGGCATCCTGTGACAA
AATCTCCAAAAGAGGTTCTATGAGCTACAGTGGTGATATGTGGACAAGGA
ATAATCACAAATCAGAAAGGATGAACTGGACCAACCCAGGTTCTGCCCTA
AAATGATAGACAGCCCAGGCTGGGCCAGTTTTAGAGAGTGGAAAGACCGG
TTACTGACAAGCTAAGAAGTGTCAACAACAGAAAGAATGCTCTTCCCAGG
CAGTGATGTGTGAATGTGACTGGTGCACCACCCTTAATGGCTCAGAGCAG
ACCCAGAGTTTAACAGTCTTGAGTTCAAGGTCAGTAGATAGAGCCACCTT
TCTGGTCACTCATTTGCTGATCCTTGCTGTATAATACTGAGATGCCAAGC
TCCTTTAAACACAATGTTGCTCCCATTGCTTAATGATTAGTGTCTGTGTT
GAAAGGATCTTTAAAGAATTCAGGGNTTATAATAAAATTCAATCTTGTTC
CTATGTTAATTTTAATCCTATAACGTTTTAAATACTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_c22.g1 MSMg01no109_c22.g1 CHROMAT_FILE:
MSMg01no109_c22.g1 PHD_FILE: MSMg01no109_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:18 2005
         (285 letters)



>mm_chr3_46315193_46315877
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagactactcaagtagaaggcacctccagcagtgctgttccttacaagctttggaag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 485 caagagactactcaagtagaaggcacctccagcagtgccgttccttacaagctttggaag 426

                                                                       
Query: 61  caaaagatactgctgtctttgggcagcagacaggtgagcaatagacgtggttatgttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caaaagatactgctgtctttgggcagcagacaggtgagcaatagacgtggttatgttttg 366

                                                                       
Query: 121 ttcataactcagtatcacttggagggtagtggctaggtggcatcctgtgacaaaatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttcataactcagtatcacttggagggtagtggctaggtggcatcctgtgacaaaatctcc 306

                                                                       
Query: 181 aaaagaggttctatgagctacagtggtgatatgtggacaaggaataatcacaaatcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaaagaggttctatgagctacagtggtgatatgtggacaaggaataatcacaaatcagaa 246

                                                        
Query: 241 aggatgaactggaccaacccaggttctgccctaaaatgatagaca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggatgaactggaccaacccaggttctgccctaaaatgatagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)