BAC Information

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BAC

Clone NameMSMg01-109I20
Chromosome3 (Build37)
Map Location 20,139,911 - 20,140,147
singlet/doubletsinglet
Overlap geneCpa3
Upstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, EG664965
Downstream geneLOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109I20.T7 (MSMg01no109_i20.b1)MSMg01-109I20.TJ (MSMg01no109_i20.g1)
ACCAG322709AG322710
length717723
length of high quality
(start - end)
516 (67 - 582)235 (77 - 311)
definitionCHROMAT_FILE: MSMg01no109_i20.b1 PHD_FILE: MSMg01no109_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005CHROMAT_FILE: MSMg01no109_i20.g1 PHD_FILE: MSMg01no109_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCCCGTTTCTCCCTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATGTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGATGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCGATTCTCGATCTTA
CAGCACAAACCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATA
TCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAAGAG
ATAGTTCTTTAAGAATGCCATTGGCATCTTGATAAGGATTGATTTTGATT
TGTAGATCATTTTGCACAGTATGAACATGCCTTACGGTGGTTTTACTGCT
GTGAACAGACACTGTGACCAAAGAAACTCTTATAAGGACAACACTTAATT
GGGTCTGGCTTACAGGTTTAGAGTTTCAGCCCATTATTATCAAAGCAGGA
GCATAGCAGTGTCTAGGCAGGCATGATGCTGGAAGAACTGATAGTTCTAC
ATCTTCTCCAGAAGATA
CCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGAGGAGCCATAAAATTGTAA
AATCTGAATAACTGCTAACTGTGGCTAAATCAATTATTAAATAATCATGT
ACATACCATTAAAGCATGATTAATGAAGAGTTGACTCTTCTACTTGCTCT
TCTCAATGCATTGTCCTAAACTGTTACTTAGTACAAATGAATTGTTTCCT
ACTACTTTATATTCAACAGTTCTTAAATACATTTGTAAAAAAAAAAGATT
ATCTTTAGCTTCTTAATTACACATATTCTTACATCCCTTTATGTTGCATA
ATGTATGGTCGGAGTGAGTATAGAATCTATTGCTTCACCTCCTGTGAGGT
TATAGATACTCAGATATTAACTAAAAGCCAAATGAAATCACTAAACGTCT
TCGTCACTCTATCTTATTCCTTTGAATAGGTATTTCTCATTTGAACCCTG
TAACCATTATTTCTACAAAATCCTTCTGAATATATACCCTAACTTTCTCA
AGCTAATTCTATATTTACCCATATCTCTATTATTTTTATTATATTCACTT
GTATTTATATTCCACTCACTCCCATCTTACAATTGTATTTTGTCTTATTT
TTATATACTATTAATTATATTCTAACCTTTTATATTTTTTTTATTTTTAT
TTTTAATTTCCTACTAATTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_i20.g1 MSMg01no109_i20.g1 CHROMAT_FILE:
MSMg01no109_i20.g1 PHD_FILE: MSMg01no109_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:49 2005
         (235 letters)



>mm_chr3_20139711_20140347
          Length = 637

 Score =  424 bits (219), Expect = e-123
 Identities = 232/237 (97%), Gaps = 2/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggaggagccataaaattgtaaaatctgaataactgctaactgtggctaaatcaatta 60
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 437 aggggaggagccataaaattgtaaaatctgaataattgccaactgtggctaaatcaatta 378

                                                                       
Query: 61  ttaaataatcatgtacataccattaaagcatgattaatgaagagttgactcttctacttg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 377 ttaaataatcatgtacataccattaaagcatgattaataaagagttgactcttctacttg 318

                                                                       
Query: 121 ctcttctcaatgcattgtcctaaactgttacttagtacaaatgaattgtttcctactact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcttctcaatgcattgtcctaaactgttacttagtacaaatgaattgtttcctactact 258

                                                                    
Query: 181 ttatattcaacagttcttaaatacatttgt--aaaaaaaaaagattatctttagctt 235
           ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 257 ttatattcaacagttcttaaatacatttgtaaaaaaaaaaaagattatctttagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 637
Length adjustment: 9
Effective length of query: 226
Effective length of database: 628
Effective search space:   141928
Effective search space used:   141928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)