BAC Information

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BAC

Clone NameMSMg01-109K23
Chromosome3 (Build37)
Map Location 39,469,063 - 39,469,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041443, LOC100041458, LOC100040882, Intu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109K23.T7 (MSMg01no109_k23.b1)MSMg01-109K23.TJ (MSMg01no109_k23.g1)
ACCAG322808AG322809
length707695
length of high quality
(start - end)
284 (87 - 370)423 (81 - 503)
definitionCHROMAT_FILE: MSMg01no109_k23.b1 PHD_FILE: MSMg01no109_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:00 2005CHROMAT_FILE: MSMg01no109_k23.g1 PHD_FILE: MSMg01no109_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAATCACGNCCGCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
GAGAGAGACCGCGGAATTCTCACCTGTACAAACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGTGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGATTCCTCAGAAAATTGGACATAGTACTACTGTTATGATCCAGCAAT
ACCTCTCCTGGGCATATACCCAGAATATGTTCCCACTGCCAACAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCTACATGCCCCTCAACAGAGGAATGTATACATAAAATGTGGCA
CCTCTACACAATGCACTACCAATCAGCTATTATCACGACTGAATTTATGA
CTTTGTTAGCCACCATGGATGTACCCTGGACGGTTTCATCCTGCAGCGAG
GTAACACATCTCCCATAGGAACTCACCTAACATGTACTCACTGCATAAGT
GGATTTTAGCCCCAAACCTCCGATACCCCCTATATTCTATACCCTTCCCC
ACTCCCT
CCCTCGAACTNTNTACGATGATATGGTAGGCCTGGCGGCGCCTGGTTCAA
ACAGGGGGTGAACTATAGAATTTCCCCGAAATTCTGACTTAATGGGATTA
GTGTCCAGAGGTGAAGAGGTGGCTATACAAAGCATCCAGTAAGATGAAAG
GTTTTATGCACTTCGCTGAGAGTCAGCACATAAGTAGAATATAGAAAGAG
ATTCAAGGGTAGTTGTTGAGGGACCTCATTGAGAAAGATCCAGTAGAAAC
TACAACTTCACTGCACTAAAGGTAGGTGAGAGTCTGAGGAAAATTTTACC
TCTGATCTATAATGCAGTGTGATAGGAAATGTGAGTCTTCACTTTTATCT
GCTACATATGAAAAACTGTTAGATCCATCTAGGGCAAACACAAGAGAGCC
AAAACCAGAAGCTCTCCTGACAGACACAAGCTCAGGATGGAGGACGGATA
AATATGGCATGTACAGAGAGAGATGGAGAAGGTCATGTCTGATGAATTTG
TGGAGACAAGAGGGGAATAAATGAGTCATCAAATTCTAGTGCACAGCTGA
AGTCTGCTACGGACTAGACTCAGCCAGTCCTTTCACCTGCAGGAGAATCA
GAGTCTCGGTACAGGTGGGCAGGGAGTAGGCGAACAGGGTCTCAAATAGA
TGTGAACACCGAGAGAGTGTTGTATCTGAATGTAATTTCTCCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_k23.g1 MSMg01no109_k23.g1 CHROMAT_FILE:
MSMg01no109_k23.g1 PHD_FILE: MSMg01no109_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:00 2005
         (423 letters)



>mm_chr3_39468863_39469685
          Length = 823

 Score =  772 bits (399), Expect = 0.0
 Identities = 417/423 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctgacttaatgggattagtgtccagaggtgaagaggtggctatacaaagcatccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attctgacttaatgggattagtgtccagaggtgaagaggtggctatacaaagcatccagt 564

                                                                       
Query: 61  aagatgaaaggttttatgcacttcgctgagagtcagcacataagtagaatatagaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagatgaaaggttttatgcacttcgctgagagtcagcacataagtagaatatagaaagag 504

                                                                       
Query: 121 attcaagggtagttgttgagggacctcattgagaaagatccagtagaaactacaacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attcaagggtagttgttgagggacctcattgagaaagatccagtagaaactacaacttca 444

                                                                       
Query: 181 ctgcactaaaggtaggtgagagtctgaggaaaattttacctctgatctataatgcagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgcactaaaggtaggtgagagtctgaggaaaattttacctctgatctataatgcagtgt 384

                                                                       
Query: 241 gataggaaatgtgagtcttcacttttatctgctacatatgaaaaactgttagatccatct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gataggaaatgggagtcttcacttttatctgctacatatgaaaaactgttagatccatct 324

                                                                       
Query: 301 agggcaaacacaagagagccaaaaccagaagctctcctgacagacacaagctcaggatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 323 agggcaaacacaagagagccaaaaccagaagctctcctgacagacacaaactcaggaggg 264

                                                                       
Query: 361 aggacggataaatatggcatgtacagagagagatggagaaggtcatgtctgatgaatttg 420
            |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 263 tggacggataaatatggcatgtacagagagagacggggaaggtcatgtctgatgaatttg 204

              
Query: 421 tgg 423
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)