BAC Information

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BAC

Clone NameMSMg01-109L11
Chromosome3 (Build37)
Map Location 117,843,886 - 117,844,036
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109L11.T7 (MSMg01no109_l11.b1)MSMg01-109L11.TJ (MSMg01no109_l11.g1)
ACCAG322832AG322833
length729758
length of high quality
(start - end)
153 (161 - 313)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no109_l11.b1 PHD_FILE: MSMg01no109_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:02 2005CHROMAT_FILE: MSMg01no109_l11.g1 PHD_FILE: MSMg01no109_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAATTTGCGAGCGCTAAACGANTCACTATTTCTTGTACCGCCGCGGA
ANCACCNNNTTGTGCTGGCACTCGAACGCACNAGAANCNAGNGCAACGCG
GGCCAACACAGACGAGGCGAAAACCCAAACCAAGGAAGCATCTACAAAAG
CAGNGACANACATCGCTTTTGCTTCCCATGTGTGAATTTACATGCTCCTT
CTCTACGAGTTTGTTTTAATCCCCTCGAGTCTTGAAAGCATCTCCTATGG
GATTTTATTTTTTTTCTCTCCCGCTCTCTTTACAACTTAGAAAATTTGAC
CCACTTTAAAGANAAGGTTTTATTTTTTTTGANCAACCCAGAAACNAAAA
AAAGAGGAAAGGATTTCTTCCCCCCCCCCACCCACATTCAGGAGTGAGGC
TTGTGCCTGAGCAACAGCTTCTGTTCTGTAATTGGCATTTCCCCCCTTTC
TGATGACTCAGACAGCTGAATTTACATACCTTTTACTAACCATATTGCTA
ATCCTAACATAATACTTTAAAACGTTTTATTTTTTTAACACACATCTATC
AACAGTGTAAAGAAATAAGCCCTGGCTATTGTATAGAAACCAAAAAAACA
GAAGCCATGTTGAAACTTGACTTGTGAAAATAAGAAAAATAAAAAAGGCC
CTTGGAAAGAATTTTTTTTTTTCTTTGGCAGAAAAGGCCCGAAAACTGCA
TCCTGTAAACACTGAAGGAAGGGAAAAAT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTATTCCAGAAATTCTTTATTTGAAAACCGTAACTT
ATCTACTTTAACTTTGGGAAAAAAAATCTCAGTTAATCTAGAAATATAAG
AATCACTTCAAAAAGTATTTATTATTGTTAAGAATTTATTTTTATTTTAT
CTTATGAATTTAGAATCTCATGCTGAAATACAATATTTAAAACATTTTAA
AATCATTTATTTTTGTTTGTATAGATGTTTTGCCTGCATGGTGTGTTCTG
TGCATGATGTACATGCAGAGTTCTTTTATATCAGAAAAGGGAATCAGATC
TTTCTGGACCTGTATATACAGATGATTCTGACCCACCATGAGGTAATTGA
TCCTCAGTCTCCTGAAAGAACATCCTACATTCTTAGCCACGGAGTTATTT
CTCTAGCCCCTGTATAATGTATTTTGATTTAGACCTATCCCCATTCTCTT
CCTTCCAATTTTTCACCTATCACTACTATAATTATTCTCTTCAAATTTCA
TGTGATTCTTCATAATATATTTTTGTTCCTTATTTTTGAAAATCACTTTA
ATTCCGCTTAGTTTAATTATGGTTACTATGTCTTACACTTTTGTAATATT
TTTTATCTCTCTTTGTGATATTCAAATTCAATAAAAAGATGTATTATGTA
CAACTAACAAGTTTTTTCATTATCCCAATTCACTTTTCTTTATTAGTTCT
GTCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_l11.b1 MSMg01no109_l11.b1 CHROMAT_FILE:
MSMg01no109_l11.b1 PHD_FILE: MSMg01no109_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:02 2005
         (153 letters)



>mm_chr3_117843686_117844238
          Length = 553

 Score =  269 bits (139), Expect = 6e-77
 Identities = 148/151 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcgcttttgcttcccatgtgtgaatttacatgctccttctctacgagtttgttttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcgcttttgcttcccatgtgtgaatttacatgctccttctctacgagtttgttttaat 260

                                                                       
Query: 61  cccctcgagtcttgaaagcatctcctatgggattttattttttttctctcccgctctctt 120
           |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 261 cccctcgagtcttgaaagcatctcctatgggagtgtaatttttttctctcccgctctctt 320

                                          
Query: 121 tacaacttagaaaatttgacccactttaaag 151
           |||||||||||||||||||||||||||||||
Sbjct: 321 tacaacttagaaaatttgacccactttaaag 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)