Query= MSMg01no110_h20.b1 MSMg01no110_h20.b1 CHROMAT_FILE:
MSMg01no110_h20.b1 PHD_FILE: MSMg01no110_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
(179 letters)
>mm_chr3_144596721_144597299
Length = 579
Score = 339 bits (175), Expect = 8e-98
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 1 agtgtttatgttcatgaccagtattaaataaacttgctttaattggacactcatggcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtttatgttcatgaccagtattaaataaacttgctttaattggacactcatggcctt 260
Query: 61 ggtctctttcttccaattttcagatttaacaatacaattgaggttttagtttttagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctctttcttccaattttcagatttaacaatacaattgaggttttagtttttagattt 320
Query: 121 ttagttgtttagttatttttcttttattattattttatattttattattattatt 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagttgtttagttatttttcttttattattattttatattttattattattatt 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no110_h20.g1 MSMg01no110_h20.g1 CHROMAT_FILE:
MSMg01no110_h20.g1 PHD_FILE: MSMg01no110_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:05 2005
(604 letters)
>mm_chr3_144750291_144751300
Length = 1010
Score = 1056 bits (546), Expect = 0.0
Identities = 592/610 (97%), Gaps = 6/610 (0%)
Strand = Plus / Minus
Query: 1 tgtaacgaaagtacacacaaccaagaagccccgaacctccagaaccaactgtgcagcctc 60
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct: 810 tgtaacgaaagtacacacaaccaagaagctccaaacctccagaaccaagtgtgcagcctc 751
Query: 61 agaagcacctgggacgtgatcacagcctcctccgacctgaaccatagcctccccgtgcat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agaagcacttgggacgtgatcacagcctcctccgacctgaaccatagcctccccgtgcat 691
Query: 121 ggggttggacttccagcccctcccacgttctccctcttgcaggctggtgaccgagtggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggggttggacttccagcccctcccacgttctccctcttgcaggctggtgaccgagtggtc 631
Query: 181 tgcttagtgattgatgtgtccaggaagatggcggaggtaaacactgactccaaatgattg 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 tgcttagtgattgatgtgtccaggaagatggcagaggtaaacactgactccaaatgattg 571
Query: 241 aaaaccattcttccctactccctcatcaggttttaactc-tttttttttcttcaatgtat 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 570 aaaaccattcttccctactccctcatcaggttttaactcttttttttttcttcaatgtat 511
Query: 300 catggggtgggggtacaaagggttttaaagagtccaagacatcttattttcttgagaaag 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 510 catggggtgggggtacaaagggttttaaagagtccaagatatcttattttcttgagaaag 451
Query: 360 aggtaggacaaacctcaggagacttagggattgagatggtgagat-----aaatccatcc 414
||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct: 450 aggtaggacaaacctcaggagacctagagattgagatggtgagataaatgaaatccatcc 391
Query: 415 tattagcatctccaggtcagtgctaattgtaactttccccccctttccccatgacggaga 474
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct: 390 tattagcatctccaggtcagtgctaattgtaacttttctcccctttccccatgatggaga 331
Query: 475 caaaagttactgtgtccctacttatcccctgcactctttgaggaagtgaaccaaagccac 534
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 330 caaaagttactgtgtccctacttatctcctgcactctttgaggaagtgaaccaaagccac 271
Query: 535 aaagaagtaatgtttactgtgcccacaccagctaggtatccaactccagggaaatgggaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaagaagtaatgtttactgtgcccacaccagctaggtatccaactccagggaaatgggaa 211
Query: 595 gagagaatgt 604
||||||||||
Sbjct: 210 gagagaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1010
Length adjustment: 10
Effective length of query: 594
Effective length of database: 1000
Effective search space: 594000
Effective search space used: 594000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
