Query= MSMg01no110_m07.b1 MSMg01no110_m07.b1 CHROMAT_FILE:
MSMg01no110_m07.b1 PHD_FILE: MSMg01no110_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:27 2005
(663 letters)
>mm_chr3_144550606_144551671
Length = 1066
Score = 1060 bits (548), Expect = 0.0
Identities = 633/664 (95%), Gaps = 7/664 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttaggtctctaaaaatagtcttatcaaatatccattttctgaattcaaaaaa 64
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttttgtctctaataatagtcttatcaaatatccattttctgaattcaaaaaa 264
Query: 65 gtttgaagccaatcatttattcctgtacaacaagaatccaccattgagagtctggtcttt 124
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 265 gtttgaagccaatcatttattcctctacaccaagaatccaccattgagagtctggtcttt 324
Query: 125 gtattctatgggaaaaatatgttttatcttttagagttcaaaggacaccaggtacaacac 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 325 gtattctatgggaaaaatatgttttgtcttttagagttcaaaggacaccaggtacgacac 384
Query: 185 ctctgagctgatgggtgggtgacagagactgcatggcaagtggaagccaactgaaatcat 244
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctctgagctgatgggtgggtgatagagaatgcatggcaagtggaagccaactgaaatcag 444
Query: 245 aaggaaaattcagttcatgcccagcagggagctcaacaacgagcattggggcccagtggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 445 aaggaaaattcagttcatgcccagcagggagctcaacaacgagcattggggtccagtgag 504
Query: 305 gacgaccccaaaccaagta---gaagttgtggatgttgctcctgaggacgtgagaaatga 361
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacgaccccaaaccaagtacaagaagttgtggatgttgctcctgaggacgtgagaaatga 564
Query: 362 tcatgaagctgaaatggcagtctttacatagaatgttggagttggaagagactttatcaa 421
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 565 tcatgtagctgaaatggcagtctttacatggaatgttggagttggaagagactttagcaa 624
Query: 422 cctaaagtcctaggattagtgagggggcctctccctctgtttgcaaccacttggtgggct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaaagtcctaggattagtgagggggcctctccctctgtttgcaaccacttggtgggct 684
Query: 482 cacaccctccacacactggtcatctctaattttcatctaagttcacattttacatctccc 541
||||||||||||||| || || |||||||||||||| ||||| |||||||||||||||||
Sbjct: 685 cacaccctccacacagtgatcgtctctaattttcatttaagtacacattttacatctccc 744
Query: 542 catgaattcagaggtctgtctcttctacatggatgtcaaaaat--ctcctcaatctgtaa 599
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 745 catggattcagaggtctgtctcttctacatggatgtcaaaaaggact--tcaatctgtaa 802
Query: 600 ccacctcgagctcctcctcctccccaggcacagctctttgttgtagtttcccttcccagc 659
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 803 ccacctcgagctcctcctcctccccaggcacagctctttgttatagcttcccttcccagc 862
Query: 660 tgat 663
||||
Sbjct: 863 tgat 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1066
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1056
Effective search space: 689568
Effective search space used: 689568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_m07.g1 MSMg01no110_m07.g1 CHROMAT_FILE:
MSMg01no110_m07.g1 PHD_FILE: MSMg01no110_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:27 2005
(634 letters)
>mm_chr3_144732185_144733218
Length = 1034
Score = 1156 bits (598), Expect = 0.0
Identities = 625/634 (98%), Gaps = 2/634 (0%)
Strand = Plus / Minus
Query: 1 ttgtagctgtgcatgtctgccattggcatcaggtttcccagtgcctacatctccata-gg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 833 ttgtagctgtgcatgtctgccattggcatcaggtttcccagtgcctacatctcca-aggg 775
Query: 60 ctgggagcttgggggcctctacagctcaggtcccagatggagctgactccttcttcctgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctgggagcttgggggcctctacagctcaggtcccagatggagctgactccttcttcctgt 715
Query: 120 gttgccaatatacctgatagccaggattccacttccccacagctttaaattggagctggt 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 714 gttgccaatatacctgatagccaggattccgcttccccacagctttaaattggagctggt 655
Query: 180 gaaatacagagatgggactctaagtaagggttcaagttcttgatgtcttttcatatttta 239
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 654 gaaatacagagatgggactctaagtaagggttcaagttcttgatatcttttcttatttta 595
Query: 240 cagactgaatgacagagaatggggtggaatacaaggctctgtgctggagggtaacagagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cagactgaatgacagagaatggggtggaatacaaggctctgtgctggagggtaacagagc 535
Query: 300 tgtataaatgtggagtcatgttatcagctacccattccctctgctatttaagaaggcatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtataaatgtggagtcatgttatcagctacccattccctctgctatttaagaaggcatg 475
Query: 360 gaggctaccaaggaacgtttaactcttcccccatccattagcaggagagagacacttgta 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaggctaccaaggaatgtttaactcttcccccatccattagcaggagagagacacttgta 415
Query: 420 gtgtttgatgcatgtttgaatcccaacattcaggagactatggtaggaggatagagaatt 479
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgtttgttgcatgcttgaatcccaacattcaggagactatggtaggaggatagagaatt 355
Query: 480 gaggccagactggaccatatagccaggatacgtctcagaaaactaaaatacaagacaaag 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaggccagactggactatatagccaggatacgtctcagaaaactaaaatacaagacaaag 295
Query: 540 aaagaataaaagaagttcccctgctttcttgtttttccctcccattttgtgaaagcagat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaagaataaaagaagttcccctgctttcttgtttttccctcccattttgtgaaagcagat 235
Query: 600 ttgacttcagttagaaatcacttcgaagacagac 633
||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgacttcagttagaaatcacttcgaagacagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
