BAC Information

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BAC

Clone NameMSMg01-111O03
Chromosome3 (Build37)
Map Location 99,161,553 - 99,161,768
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O03.T7 (MSMg01no111_o03.b1)MSMg01-111O03.TJ (MSMg01no111_o03.g1)
ACCAG324440AG324441
length1,1671,359
length of high quality
(start - end)
223 (41 - 263)126 (85 - 210)
definitionCHROMAT_FILE: MSMg01no111_o03.b1 PHD_FILE: MSMg01no111_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:46 2005CHROMAT_FILE: MSMg01no111_o03.g1 PHD_FILE: MSMg01no111_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTACAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACCCCACAATAAGGGCCGTTAAATTAGTTAAGGGGTGTTTTTTTCATAGA
GTATTACCTTAGAGATAAATATAAAGTTAATTTGTATAGTAGCTAGCACC
ACTATATATAATAATAGCATAAAAAGTAAATATGTGCCTTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTATTTAGTATGTATGTGTTT
GTAGGTGTGCNCTCAATACTTATCCATAGACATAATATGTGTCCAGAAGA
TAGAATCAAATGTTTTCCTCTATTATAGCAGTTCTCAACCTGTAGATCAT
GACCTCTTTGGAGGGCGGTGTGAGTCATATATCAAATAACCTGTTTTTCT
TATACTTAGAACACCATTCATTCCAGAAACAAAATTGCCGCCATTTAGTA
TCCCCCCACCTGAATTTATGGTTGCCGTCACTGCAGCTCGTATACCTGTA
TTATTCAATCGAATCGGACTGACGGTAGAGAGCCACTGCTTACTACCAAC
TGGCATCGTCCTTAACACCCACATCCCCTGAGTATCACACTTGCTTTGTG
ATTGACATGTGATCCCCAAGATACCACACCTGCCCTGTTTGGTTGTGCGC
TAGCCTACGCATATATGTTCCCAACCTGCTAGCTGCTCTTGACAGGCCCC
TGATTTCTATCCTGTGCCTAGCTCCTCATTCGCCCGCTACTCCACTGTAA
CATCTGTTGCTTTGAGCATCCTCTGATTCACAATTAGTTGCCTCCCTTTG
AAGCTCTTCAAGACCCTCCCTTCCTTTACCTACCTTTGCTTCCTCGTTAT
AACTTCCTTTTGCCTGCCCTGGATATATCCCTTCTTTGCACCCCCCTCGC
CCCCTTTTCCAAGCCAAACCCTCCACTTAACTATCTTCCGCATTCCTCCT
GGTCTTTCCCCGGTATTTCTCCCTTTGTAAAACCCCCTACAACCCCTACC
CCTTCCTCTTTTTGAACCTTAACATCTCCTTTTCCTCCTCCCCTCTCTTC
TGTGCTCTATTTCCATAGATTTACCTTCCCCCTCTTTTTTTTACCCCCTC
CTTTCCTTTTTAACTAACCTCCACCATCCTTCTCCCTTTTCCTNAATGCT
AATATCTCTCACTCACT
CATACTTNNNNNNAACATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTAACTGAGGAATACCAAATGGC
TAAGAAGCACCGAACGAAATGTTCAAAGTCCTTAGCGATCAGAAAAATGC
AAATCAAAATGACCCTGAGATTCCACCTTACACCAATCAGAATGGCTAAN
ATCAAAACCTCAGGTGACAACACATGTTGGAAAGAATGTGGAGAAAGAGG
AGCACTCCTCCATTGCTGGTGGTATTGCAATCTGGTACACCCACTCTGGA
AATCAAGCTGGAAGTTCCTCAAAAAATTGATCCAAACCCTGAACCCCTTG
TTTACCCTACCAAAATTTTTTTGAAAGGCCCCAAAGGAACTTTCCCTTTG
AAAAATTTTCCCGGGGCCCTTAAAAACCCAAAATGTGTCTCCCCTATTGG
ACCCCCNNNNNTNNNNNCCCCCCCCCCCCCCCCGGGGGGGATTTTAAAAA
AAATCCCCCCGCGGGCCACAAGGGGGTTCCCCCCCCCCTCTTGTGGAGAA
AACATTTTTTTTTTTATTTTCCCCCCCCCCCCGCGGGTTTTTTTTTTTTT
TTTTAATAAAAAAAAAAAAAAAAAGACGCCCCCCCCCCCCCCCCCGGAAG
GAAAACAGACCTTTTTTTTTTNTCGTTTCCCCCGNTATTTTTTTTTTCTT
CTTATCACGGCGCGGGGCGGGGGNNNTCTCCCTAAAACAAATAACAAAAT
GGTGGTGGGGGGGGGGTGTGCCAAAANGGGGTGGGGGTGGGGGGGNGTCC
CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAC
CCNNNNNNNTCTTTCNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCGGNNNNNNNNNNNNNNNNNNNNTCCTNT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTCCTNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNN
NNNNTTACNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
CTTNNNNNNNNNNNNNNNNNTCATNTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNNNTNNNNNTNNNNNNTNTNNNNNNNNNNN
NNNNNNNNNNNTNTNNNTTNTNNNTNNTTTTTNNNTTTTTTTTTTTTTTT
TTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o03.b1 MSMg01no111_o03.b1 CHROMAT_FILE:
MSMg01no111_o03.b1 PHD_FILE: MSMg01no111_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:46 2005
         (223 letters)



>mm_chr3_99161349_99161971
          Length = 623

 Score =  371 bits (192), Expect = e-107
 Identities = 210/216 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccccacaataagggccgttaaattagttaaggggtgtttttttcatagagtat 64
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccccacaataaggggagttaaattagttaaggggtgtttttttcatagagtat 264

                                                                       
Query: 65  taccttagagataaatataaagttaatttgtatagtagctagcaccactatatataataa 124
           ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgttagagataaatacaaagttaatttgtatagtagctagcaccactatatataataa 324

                                                                       
Query: 125 tagcataaaaagtaaatatgtgcctttatttatttatttatttatttatttatttattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcataaaaagtaaatatgtgcctttatttatttatttatttatttatttatttattta 384

                                               
Query: 185 tttatttatttagtatgtatgtgtttgtaggtgtgc 220
           |||||||||||| |||||||||||||||||||||||
Sbjct: 385 tttatttatttattatgtatgtgtttgtaggtgtgc 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)