Query= MSMg01no112_h05.b1 MSMg01no112_h05.b1 CHROMAT_FILE:
MSMg01no112_h05.b1 PHD_FILE: MSMg01no112_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:36 2005
(447 letters)
>mm_chr3_5314185_5315030
Length = 846
Score = 766 bits (396), Expect = 0.0
Identities = 436/458 (95%), Gaps = 18/458 (3%)
Strand = Plus / Plus
Query: 5 gaattctcttctacccctgatttctttttttgctggcatacttaacaatgattctggatt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gaattctcttctacccatgatttctttttttgctggcatacttaacaatgattctggatt 251
Query: 65 taaaaaatttatgttaaattttagagatatactgtaaattaatatgtgtgt--------- 115
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 -aaaaaatttaggttaaattttagagatatactgtaaattaatatgtgtgtgtgtgtgtg 310
Query: 116 -----atccaaagactattgaatgtgtgtacacaagtttatgtattactgtctgactcaa 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgtgtatccaaagactattgaatgtgtgtacacaagtttatgtattactgtctgactcaa 370
Query: 171 tcttaacacatcatcttacaaagaaataaaatctccaaaaacttgtgaaacttgtgaagg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tcttaacacatcatcttacaaagaaataaaatctccaaaaacttgtgaaacttgtgaagg 430
Query: 231 gcaaatagctgcttagtgggtaagtaaagactaaac-tctgagctttgaaaacgtgttac 289
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 431 gcgaatagctgcttagtgggtaagtaaagactaaacgt-tgagctttgaaaacgtgttac 489
Query: 290 cctggagggggaaaaaaggcattacattacctatcattagaggtatgtttcttttctaaa 349
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cctggagggggaaaaa-ggcattacattacctatcattagaggtatgtttcttttctaaa 548
Query: 350 tatagccacatgggtagttattatcctatctcagaaattctgcagacttggatttgatat 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tacagccacatgggtagttattatcctatctcagaaattctgcagacttggatttgatat 608
Query: 410 catcctgtattgaataattattgcaataacaatggcat 447
||||||||||||||||||||||||||||||||||||||
Sbjct: 609 catcctgtattgaataattattgcaataacaatggcat 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space: 365332
Effective search space used: 365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_h05.g1 MSMg01no112_h05.g1 CHROMAT_FILE:
MSMg01no112_h05.g1 PHD_FILE: MSMg01no112_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:36 2005
(405 letters)
>mm_chr3_5401294_5402098
Length = 805
Score = 752 bits (389), Expect = 0.0
Identities = 401/405 (99%)
Strand = Plus / Minus
Query: 1 ttctcaggttctggtttaggagaaggaatcaggggcgtgctagtcccagagcctgaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttctcaggttctggtttaggagaaggaatcaggggcgtgctagtcccagagcctgaactg 546
Query: 61 gctactagggttgcagtgcttttggctgtatctgtttgtccagacgccatgcaatgcttg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 545 gctactagggttgcagtgcttttggctgtatctgtttgtccagacaccatgcaatgcttg 486
Query: 121 tacaacacttgatcagtggcatccatggagtcttccgtttggctttcatcttgggcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tacaacacttgatcagtggcatccatggagtcttccgtttggctttcatcttgggcatca 426
Query: 181 tcatcttcatctttataacactgctttttctgatgtgtgatcaagtcaaagatcctgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcatcttcatctttataacactgctttttctgatgtgtgatcaagtcaaagatcctgggg 366
Query: 241 aaaaccacattgcactttttgcattggtattgcatgttgcttgttctaatgtagcgttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaaccacattgcactttttgcattggtattgcatgttgcttgttctaatgtagcgttca 306
Query: 301 ttggtgagttctcttttttcattatctttagcttctgcttggctctcatatttcttcctt 360
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 305 ttggtgagttctcttttttcattatctttagcttctgcttggttctcatagctcttcctt 246
Query: 361 gctttctgccgagcattctggaaccatacaacaataacccgggtg 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gctttctgccgagcattctggaaccatacaacaataacccgggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space: 315216
Effective search space used: 315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
