Query= MSMg01no112_i24.b1 MSMg01no112_i24.b1 CHROMAT_FILE:
MSMg01no112_i24.b1 PHD_FILE: MSMg01no112_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:45 2005
(395 letters)
>mm_chr3_38720025_38720819
Length = 795
Score = 748 bits (387), Expect = 0.0
Identities = 393/395 (99%)
Strand = Plus / Plus
Query: 1 acacaaaactgtgccccctcctccccacactaagaatgaagatgtgggaaaacagaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaaaactgtgccccctcctccccacactaagaatgaagatgtgggaaaacagaaggc 260
Query: 61 attagcaggttttctttcacccaacagaaaaatgagggttttttttttttttaatcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagcaggttttctttcacccaacagaaaaatgagggttttttttttttttaatcagaa 320
Query: 121 acaataatcatctgaagacagactcctgcagtggtgcgtgctgcttgacctcaactacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaataatcatctgaagacagactcctgcagtggtgcgtgctgcttgacctcaactacag 380
Query: 181 caaagctgggagatcactgatacagttggccacagcccagtttctttcgttctttttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagctgggagatcactgatacagttggccacagcccagtttctttcgttctttttttt 440
Query: 241 ttttcctcaaaaaaatttttttttaatttttttattaagtattttcctcatttacatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcctcaaaaaaatttttttttaatttttttattaagtattttcctcatttacatttc 500
Query: 301 caatgctatcccaaaagtcccccataccctcctccccctacccacccactcccacttttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgctatcccaaaagtcccccataccctcctccccctacccacccactcccacttttt 560
Query: 361 ggccctggggctcccctgtactgaggtatataaag 395
|||||||| | ||||||||||||||||||||||||
Sbjct: 561 ggccctggcgttcccctgtactgaggtatataaag 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_i24.g1 MSMg01no112_i24.g1 CHROMAT_FILE:
MSMg01no112_i24.g1 PHD_FILE: MSMg01no112_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:45 2005
(409 letters)
>mm_chr3_38868226_38869032
Length = 807
Score = 737 bits (381), Expect = 0.0
Identities = 402/409 (98%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 1 tgtgggttgccttcatagttaaagggaaaatcatttcctttggttgtgttttcaaagcca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtgggtttccttcatagttaaagggaaaatcatttcctttggttgtgttttcaaagcca 548
Query: 61 tttttcaaatgttaatttttttccaaataaaatcatagggtatgcaacacatagccttta 120
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 547 tttttcaaatgttaa-ttttttccaaataaaatcatagggtatgcaacacacagccttta 489
Query: 121 actaaataaaatgaggcccagatattctctttctatctttgagggattactcgtctcttc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 488 actaaataaaatgaggcccagatattctctttttatctttgagggattactcgtctcttc 429
Query: 181 ccccaaagcgtcttcctctgtaggaagcttacaaagtacttgtatttatcccacgggttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccccaaagcgtcttcctctgtaggaagcttacaaagtacttgtatttatcccacgggttc 369
Query: 241 tgagatgaaagcgacacctccagctggctggcacacgcttcgtggaatagcttgatcatc 300
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 368 tgagatgaaagcgacacctccagttggctggcacatgcttcgtggaatagcttgatcatc 309
Query: 301 acagactgatgttgaggttcactgcctttctgtgttattttttttctagtaatcttgtca 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 308 acagactgatgttgaggttcactgcctttctgtgtta-tttttttctagtaatcttgtca 250
Query: 361 tttgatgatatttattttgccacaatttaagtctcttccagatgaaagt 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttgatgatatttattttgccacaatttaagtctcttccagatgaaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 807
Length adjustment: 9
Effective length of query: 400
Effective length of database: 798
Effective search space: 319200
Effective search space used: 319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
