Query= MSMg01no112_j05.b1 MSMg01no112_j05.b1 CHROMAT_FILE:
MSMg01no112_j05.b1 PHD_FILE: MSMg01no112_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:46 2005
(434 letters)
>mm_chr3_5314182_5315014
Length = 833
Score = 712 bits (368), Expect = 0.0
Identities = 417/444 (93%), Gaps = 22/444 (4%)
Strand = Plus / Plus
Query: 8 gaattctcttctacccatcatttctttttttgctggcatacttaacaatgattctggatt 67
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattctcttctacccatgatttctttttttgctggcatacttaacaatgattctggatt 254
Query: 68 ttgaaaa--tttatgttaaattttagagatatactgtaaattaatatgtgtgt------- 118
|||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ---aaaaaatttaggttaaattttagagatatactgtaaattaatatgtgtgtgtgtgtg 311
Query: 119 -------atccaaagactattgaatgtgtgtacacaagtttatgtattactgtctgactc 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgtgtgtatccaaagactattgaatgtgtgtacacaagtttatgtattactgtctgactc 371
Query: 172 aatcttaacacatcatcttacaaagaaataaaatctccaaaaacttgtgaaacttgtgaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aatcttaacacatcatcttacaaagaaataaaatctccaaaaacttgtgaaacttgtgaa 431
Query: 232 gggcaaatagctgcttagtgggtaagtaaagactaaac-tctgagctttgaaaacgtgtt 290
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 432 gggcgaatagctgcttagtgggtaagtaaagactaaacgt-tgagctttgaaaacgtgtt 490
Query: 291 accctggagggggaaaaaaggcattacattacctatcattagaggtatgtttcttttcta 350
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accctggagggggaaaaa-ggcattacattacctatcattagaggtatgtttcttttcta 549
Query: 351 aatatagccacatgggtagttattatcccatctcagaaattctgcagacttggatttgat 410
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 550 aatacagccacatgggtagttattatcctatctcagaaattctgcagacttggatttgat 609
Query: 411 atcatcctgtattgaataattatt 434
||||||||||||||||||||||||
Sbjct: 610 atcatcctgtattgaataattatt 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 833
Length adjustment: 9
Effective length of query: 425
Effective length of database: 824
Effective search space: 350200
Effective search space used: 350200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_j05.g1 MSMg01no112_j05.g1 CHROMAT_FILE:
MSMg01no112_j05.g1 PHD_FILE: MSMg01no112_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:46 2005
(400 letters)
>mm_chr3_5401299_5402098
Length = 800
Score = 758 bits (392), Expect = 0.0
Identities = 398/400 (99%)
Strand = Plus / Minus
Query: 1 ttctcaggttctggtttaggagaaggaatcaggggcgtgctagtcccagagcctgaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttctcaggttctggtttaggagaaggaatcaggggcgtgctagtcccagagcctgaactg 541
Query: 61 gctactagggttgcagtgcttttggctgtatctgtttgtccagacgccatgcaatgcttg 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 540 gctactagggttgcagtgcttttggctgtatctgtttgtccagacaccatgcaatgcttg 481
Query: 121 tacaacacttgatcagtggcatccatggagtcttccgtttggctttcatcttgggcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tacaacacttgatcagtggcatccatggagtcttccgtttggctttcatcttgggcatca 421
Query: 181 tcatcttcatctttataacactgctttttctgatgtgtgatcaagtcaaagatcctgggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcatcttcatctttataacactgctttttctgatgtgtgatcaagtcaaagatcctgggg 361
Query: 241 aaaaccacattgcactttttgcattggtattgcatgttgcttgttctaatgtagcgttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaaaccacattgcactttttgcattggtattgcatgttgcttgttctaatgtagcgttca 301
Query: 301 ttggtgagttctcttttttcattatctttagcttctgcttggctctcatagctcttcctt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 300 ttggtgagttctcttttttcattatctttagcttctgcttggttctcatagctcttcctt 241
Query: 361 gctttctgccgagcattctggaaccatacaacaataaccc 400
||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gctttctgccgagcattctggaaccatacaacaataaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
