BAC Information

Click to search

BAC

Clone NameMSMg01-112K04
Chromosome3 (Build37)
Map Location 157,575,241 - 157,575,487
singlet/doubletsinglet
Overlap geneCth
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686, LOC624684
Downstream geneAnkrd13c, Sfrs11, Lrrc40, Lrrc7, LOC100041008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K04.T7 (MSMg01no112_k04.b1)MSMg01-112K04.TJ (MSMg01no112_k04.g1)
ACCAG324993AG324994
length696728
length of high quality
(start - end)
247 (46 - 292)532 (76 - 607)
definitionCHROMAT_FILE: MSMg01no112_k04.b1 PHD_FILE: MSMg01no112_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005CHROMAT_FILE: MSMg01no112_k04.g1 PHD_FILE: MSMg01no112_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCGGAAGTAGGGCGGNAATCTTGGCTTTTTCCCACAGAAGGAGCTCA
GTGCTGCAATCTGGATGGCTTCAGAGCAGGCAGGACTTTTGCTTCTTACA
AACCAAGTGTGAAACCTTGTACCTTGTCCGGTTTTAATGATTAAAAATCT
AAGCAAAGTAGTTTGTACTCACTTGGCACAAAAGTGGTTTCGTAAACTGC
TCCATGTGTTTAAAGAGTCATAAAATACACCAGTCTCTGCTGCAGGCAAT
AAGCCCAGGGCCAGCCAACAACTGTAAAGAAACAGGTTTAGGGTGGNACC
AAGTCCCTGTGTAGGGCCAAGTCCATCCTGTTAGAACAATCCCGACAGCT
CTCTGGGGTTTCCATGAGACTCCGATCCTCTTCATAACAGGTCTGTTGTC
AGGAGCTCATCACACCCCAGAGTCTTGATTCCTAATGCCATAGCATGGTC
ATTAAATGCCAACATTTGAATTGGGGAGACACAGACATTCCAATCACAGC
CATGAGTGTTTTAAGTAACAACCACCTGACAGAGACCTTTATATGTGTAT
ATATGTGTATAGCATGTAAGTGTGTGCAAATGCACGTTTTACAGACATAG
GGTGATTAGCTGGCGGCAACCATTAGGGCAGTATATTATTCTGAACAAAT
TTTCTCTTCGAAAACCGTTACTTGGTTGAATTTGCGTGCGTGCGTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGACTG
AGAAGCGCCTGAAAAAATGCTCACATCCTTAATCATCAGAAAAATGTAAA
TCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGCCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCC
GCAATATCTCTCCCGGGCATATATCCAGAAGATGTCCCAACCGTTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCTTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAGTATACCCGAGATATAAGATACAATTTG
CAAAACACATGACATTGAATAAGAACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k04.b1 MSMg01no112_k04.b1 CHROMAT_FILE:
MSMg01no112_k04.b1 PHD_FILE: MSMg01no112_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:50 2005
         (247 letters)



>mm_chr3_157575041_157575687
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcagtgctgcaatctggatggcttcagagcaggcaggacttttgcttcttacaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gctcagtgctgcaatctggatggcttcagagcaggcaggacttttgcttcttacaaacca 388

                                                                       
Query: 61  agtgtgaaaccttgtaccttgtccggttttaatgattaaaaatctaagcaaagtagtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agtgtgaaaccttgtaccttgtccggttttaatgattaaaaatctaagcaaagtagtttg 328

                                                                       
Query: 121 tactcacttggcacaaaagtggtttcgtaaactgctccatgtgtttaaagagtcataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 327 tactcacttggcacaaaagtggtttcgtaaactgctccatgtgtttaaagagtcataaat 268

                                                                       
Query: 181 tacaccagtctctgctgcaggcaataagcccagggccagccaacaactgtaaagaaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacaccagtctctgctgcaggcaataagcccagggccagccaacaactgtaaagaaacag 208

                  
Query: 241 gtttagg 247
           |||||||
Sbjct: 207 gtttagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)