NAAGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAACGATCCCTCAGGGAATTCAGAGCTCATCACTGTGACAT
GAAAAGCTTGACTTCTCAGCTAGATTCTCTGCTTCCTCCCTCTCTGTCAT
TTCCTAGGCCTTTCTGTCTCAAATAGATCCCTTACCAATTCCAAAACAGC
TGGCCTAATTCATCTCTCGAAAATGGCAATGATCCCCTAGTAACAAATCT
CGGGTGCACAGGTGTTTGAAGGAATCCTAGATATAGCTAAGCAGGAGCCA
AATTCCAGGTGAAATCACCTATAAAGGTTATAACTATGAGACCAAAAATT
GCCTACTAATCTTGCTTCTAAAGGTTTATGGCTCAAGGCTACACTTAAGA
ACCTTCTTTCTCAAAGTGAGTCTCCATTATCCTCCACTGCAACTGTTCGG
GAGATAGTTTGGTGGAGCTCAGAAGTATAATGACTGCAGAGATGCAGCCT
CTGTGTGGAACACCTGAAAGTTTTATATTCCTTATTATCATGAAACAGTT
TCAGTGACGTTCTACAGTTTCCTGAGAAGGAGTAAGAGATACACTCTCTT
GTCCTTGATATTCTTACCGTTGTCTATCCATCTGATAGCAGATGCTTTTC
CTATAATTTCTCTGAGCAAAACGAGTGCACTTTCTGCTTTG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGGTAGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGTTGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCCCAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCATGATATAAGATAC

Query= MSMg01no113_f08.b1 MSMg01no113_f08.b1 CHROMAT_FILE:
MSMg01no113_f08.b1 PHD_FILE: MSMg01no113_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:43 2005
         (620 letters)



>mm_chr3_46578630_46579649
          Length = 1020

 Score = 1183 bits (612), Expect = 0.0
 Identities = 618/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggaattcagagctcatcactgtgacatgaaaagcttgacttctcagctagattctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agggaattcagagctcatcactgtgacatgaaaagcttgacttctcagctagattctttg 260

                                                                       
Query: 61  cttcctccctctctgtcatttcctaggcctttctgtctcaaatagatcccttaccaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcctccctctctgtcatttcctaggcctttctgtctcaaatagatcccttaccaattc 320

                                                                       
Query: 121 caaaacagctggcctaattcatctctcgaaaatggcaatgatcccctagtaacaaatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacagctggcctaattcatctctcgaaaatggcaatgatcccctagtaacaaatctc 380

                                                                       
Query: 181 gggtgcacaggtgtttgaaggaatcctagatatagctaagcaggagccaaattccaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgcacaggtgtttgaaggaatcctagatatagctaagcaggagccaaattccaggtg 440

                                                                       
Query: 241 aaatcacctataaaggttataactatgagaccaaaaattgcctactaatcttgcttctaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcacctataaaggttataactatgagaccaaaaattgcctactaatcttgcttctaa 500

                                                                       
Query: 301 aggtttatggctcaaggctacacttaagaaccttctttctcaaagtgagtctccattatc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtttatggctcaaggctactcttaagaaccttctttctcaaagtgagtctccattatc 560

                                                                       
Query: 361 ctccactgcaactgttcgggagatagtttggtggagctcagaagtataatgactgcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccactgcaactgttcgggagatagtttggtggagctcagaagtataatgactgcagag 620

                                                                       
Query: 421 atgcagcctctgtgtggaacacctgaaagttttatattccttattatcatgaaacagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcagcctctgtgtggaacacctgaaagttttatattccttattatcatgaaacagttt 680

                                                                       
Query: 481 cagtgacgttctacagtttcctgagaaggagtaagagatacactctcttgtccttgatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgacgttctacagtttcctgagaaggagtaagagatacactctcttgtccttgatat 740

                                                                       
Query: 541 tcttaccgttgtctatccatctgatagcagatgcttttcctataatttctctgagcaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttaccgttgtctatccatctgatagcagatgcttttcctataatttctctgagcaaaa 800

                               
Query: 601 cgagtgcactttctgctttg 620
           ||||||||||||||||||||
Sbjct: 801 cgagtgcactttctgctttg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)