BAC Information

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BAC

Clone NameMSMg01-114B09
Chromosome3 (Build37)
Map Location 55,786,880 - 55,787,302
singlet/doubletsinglet
Overlap genenone
Upstream geneCcna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114B09.T7 (MSMg01no114_b09.b1)MSMg01-114B09.TJ (MSMg01no114_b09.g1)
ACCAG326056AG326057
length714726
length of high quality
(start - end)
634 (41 - 674)622 (76 - 697)
definitionCHROMAT_FILE: MSMg01no114_b09.b1 PHD_FILE: MSMg01no114_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:42 2005CHROMAT_FILE: MSMg01no114_b09.g1 PHD_FILE: MSMg01no114_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
AAAATAATTCTTTTATAAAAAAATACAAAATTAAATGTTAAGCTTTCAGT
TATACTTCTCTAAATATGCTTGGAAAGCATGAGCATAAGGAGAAAAAATC
ATTGAGCAGAAATAGATTTGTAAGCAACAAAAAAAAATCGTTACAAATAA
AGTCATTACAACAACCACCATGGACTGCTGGTGAGATTGCAAGCTGGTAC
AACCACTCTGAAAATCAGCTTGGCGGTTCATCAGAAAATTGGAAATAGGA
CTATCTGAGGACCCAGCTATACCACTCCTGGGCATATACCCAGAAGATTC
TCCAAGAAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAAT
AGCCAGGAGCTGGAAACAACCCAGATGTCCCTCAATAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAC
AATGACTTCCTGAAATTCTTAGTCAAATGGATGGAACTATCATCCTGAGT
GAGCTAACCCAATCACAAAAGATCACACATGATATGCACTCACTGATACC
AAGATACAATTCACAGACCACATGAAGCTCAAGATTAAGGAAGACCAAAG
TTTGGATACTTCAGTCCTTCTTAGATGGGAGAAAAATACCCATGGAAGGA
GATACAGAGACAAT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTTGGTAGATTTTTCCTTTGATG
AGTATGAAGTGTCCTTCCTTACCTTTTTTGATAAATTTTGATGGAAAGTT
GATTTTATTTGCTTTTAGAATGGCTACTCCAGCTTGTTTCTTGGGACTAT
TTCCTTGTAGAATTGTTTTCTAGTCCTTTACTCTGAGGTAGTGTCTGTCT
TTAACACTGAGGTGCGTTTCCTGTATGCAGCAAAATGCTTGGTCCTATTT
ACATATCCAGTCGGTTAGTCTTTGTCTTTTTCTTGGGGAATTGATTCCAT
TGATGTTAAGAGATAATAAGAAACAGTGATTGTTGCTTCTTGTTATTTCT
GTGGTCAGAGGTGGAATTATGTTTCTGTGGCTATTTTCTTTTAGGTTTGT
TGAAAGAAGATTACTTTCTTGCTTTTTCTAGGGCCTACTTTCCCTCATTG
AGTTTTCTGTCTATTATCCTTTGTATGGCTGGATTTGTGGAACGATATTG
TGTAAATTTGGTTTTATCATGGAAAAATATCTTGGTATCTCCATCTATGG
TAATTGAGAGATTTGCTGGGTATACTAGTATGGGCTGGCATTTGTGTTCT
CTTAGGGTCTGTATGACATCTGCCCAGGATCTTCTAGGTTTCATAGTCTC
TGGTGAGAAGCCTGATGTAATTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_b09.b1 MSMg01no114_b09.b1 CHROMAT_FILE:
MSMg01no114_b09.b1 PHD_FILE: MSMg01no114_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:42 2005
         (634 letters)



>mm_chr3_55786880_55787910
          Length = 1031

 Score =  779 bits (403), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 5/427 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaaataattcttttataaaaaaatacaaaattaaatgttaagctttcagttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaattcaaaataattcttttataaaaaaatacaaaattaaatgttaagctttcagttat 364

                                                                       
Query: 64  acttctctaaatatgcttggaaagcatgagcataaggag-aaaaaatcattgagcagaaa 122
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 363 acttttctaaatatgcttggaaagcatgagcataaggagaaaaaaatcattgagcagaaa 304

                                                                       
Query: 123 tagatttgtaagcaacaaaaaaaaatcgttacaaataaagtcattacaacaaccaccatg 182
           ||||||||||||||||   ||||||| | |||||||||||||||||||||||||||||||
Sbjct: 303 tagatttgtaagcaac---aaaaaat-ggtacaaataaagtcattacaacaaccaccatg 248

                                                                       
Query: 183 gactgctggtgagattgcaagctggtacaaccactctgaaaatcagcttggcggttcatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gactgctggtgagattgcaagctggtacaaccactctgaaaatcagcttggcggttcatc 188

                                                                       
Query: 243 agaaaattggaaataggactatctgaggacccagctataccactcctgggcatataccca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agaaaattggaaataggactatctgaggacccagctataccactcctgggcatataccca 128

                                                                       
Query: 303 gaagattctccaagaaggacacatgctccactatgttcatagtagccttatttataatag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaagattctccaagaaggacacatgctccactatgttcatagtagccttatttataatag 68

                                                                       
Query: 363 ccaggagctggaaacaacccagatgtccctcaatagaggaatggatacagaaaatgtggt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  ccaggagctggaaacaacccagatgtccctcaatagaggaatggatacagaaaatgtggt 8

                  
Query: 423 acattta 429
           |||||||
Sbjct: 7   acattta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1031
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1021
Effective search space:   637104
Effective search space used:   637104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)