BAC Information

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BAC

Clone NameMSMg01-114C11
Chromosome3 (Build37)
Map Location 153,131,533 - 153,131,808
singlet/doubletsinglet
Overlap geneSt6galnac3
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneEG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114C11.T7 (MSMg01no114_c11.b1)MSMg01-114C11.TJ (MSMg01no114_c11.g1)
ACCAG326106AG326107
length729730
length of high quality
(start - end)
---278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no114_c11.b1 PHD_FILE: MSMg01no114_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:46 2005CHROMAT_FILE: MSMg01no114_c11.g1 PHD_FILE: MSMg01no114_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACAGATTTCGGACTGCCTTGCCTCCCGATGCTAAGGCTAAAGGTAAATA
TTACCCCCATTTTTCTAGTAAGGTGCTGGCATTTTCTTAAGCTATGCATG
TCCTGTTGGAAGGGAAGTATACTTACATACCCCAGATCTGCGTGCCCGGA
CACAGTCCGACTCTCTAGTTGCTCAATATTAACGAATTGGTTAGGAGGCT
CTGACGCGCGCCACACCCCTTATGTCACCTTTTACTACCCTGACAACTGT
GCCCAACATGACTGACACTACCAATATGCACCCCTGGCACCCTCCCTTCG
CCCGCATATGTCCCTGACCGCCTCCCCCAACGACAGCGGGATTATTAAAG
GGTTCGCAGGCCCGAGGGGCCATACCGCGACGTATGTGTTACCCCCTCTT
ACTACCTGACCGCTTTCCTCCACCCTCTCCCTGCTGCTTCTCTTGATCCT
CCCCCCCCCCCCCCCGCACCATGCTTCCCCCCTTTCCCAACCCCCCCGCT
ACCATGTTCCCCATCCTCGCCCGCCCATCCTCACATCCCCCCTACGCTCC
TCTCCATGTTCCCCTTCTTCCGAAGTCTACTCACCATTCCGTACCCCTTC
CAGTTCTGTCCGCGCGCTTCTACGCCTCCCTTCTCCCCAGTCATGTTCTT
TTCCTCCCCCCGCGTTCTCTCGCTCTGTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTTCCTGCTTAGGAACAGT
TCCTTGTATTGTAAATTATCATTCGCACACCTGTGGATACCTGGGTTTTT
CATCCCTATTGGTTGTCGTGGCTTTATTTTTATCTAAGTGCAATTTGAAA
ATACACAGCATTTAAATGAGATCTGTTTTCGGTTTTCTCTCTATAAAAAT
TAAGGAAGACTATTTGAATTCACTTGAAAACTCTGGANACTCATTATCAT
TTGTCTTAGTTTCTATTGCTGAACTAAAACATCACGCCCAAAGCAAAGAG
AGGTACAGGGGGTGGGGCGGGGGAGATGGCTTACTTTTTACTACTCTCAG
GCTGTGGAGGAGTGACGCCTGCTGGCTTGTTCCTCATGGCTTGTTCATTT
TGCTTTCTTACCGTCCGAGACGGCCTGCCCAAGGGTGGCAGCGGGCTGAG
TTCTCACATACCCATCATTAGTCAAGAAAATGCCCTAACGCCTGACCACC
GGTCAGCTTGATGAAGGCATTTTCTCAGNTGAGGGTCCTCTTCCCAGATG
TCCCCAGCTGTATCCAAGTTAACATCACCTATAGCTACTTATTCTAGATT
GTTATTTCCTGAGGAAACTGGCAGCAAAGATTCCTTTAACCAGATAAAAA
ATAATTACAAGGTGTTGAACACAACCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_c11.g1 MSMg01no114_c11.g1 CHROMAT_FILE:
MSMg01no114_c11.g1 PHD_FILE: MSMg01no114_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:46 2005
         (278 letters)



>mm_chr3_153131333_153132008
          Length = 676

 Score =  482 bits (249), Expect = e-140
 Identities = 270/278 (97%), Gaps = 2/278 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttttcctgcttaggaacagttccttgtattgtaaattatcattcgcacacctgtgg 60
           ||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 476 tttcttttcctgcttagcaacagttccttgtatcgtaaattatcattcacacacctgtgg 417

                                                                       
Query: 61  atacctgggtttttcatccctattggttgtcgtggctttatttttatctaagtgcaattt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 416 atacctgggtttttcatccctattggttgtcatggctttatttttatctaagtgcaattt 357

                                                                       
Query: 121 gaaaatacacagcatttaaatgagatctgttttcggttttctctctataaaaattaagga 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaaaat--acagcatttaaatgagatctgttttcggttttctctctataaaaattaagga 299

                                                                       
Query: 181 agactatttgaattcacttgaaaactctgganactcattatcatttgtcttagtttctat 240
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 298 agactatttgaattcacttgaaaactctggaaattcattatcatttgtcttagtttctat 239

                                                 
Query: 241 tgctgaactaaaacatcacgcccaaagcaaagagaggt 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgctgaactaaaacatcacgcccaaagcaaagagaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 676
Length adjustment: 9
Effective length of query: 269
Effective length of database: 667
Effective search space:   179423
Effective search space used:   179423
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)