BAC Information

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BAC

Clone NameMSMg01-114L15
Chromosome3 (Build37)
Map Location 158,431,714 - 158,432,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114L15.T7 (MSMg01no114_l15.b1)MSMg01-114L15.TJ (MSMg01no114_l15.g1)
ACCAG326537AG326538
length770750
length of high quality
(start - end)
84 (194 - 277)544 (80 - 623)
definitionCHROMAT_FILE: MSMg01no114_l15.b1 PHD_FILE: MSMg01no114_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:29 2005CHROMAT_FILE: MSMg01no114_l15.g1 PHD_FILE: MSMg01no114_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCCCCCAGCGAGGGGCACCATTCTAATNTTTNNNNNNNCCGTNNNNNN
NCACTTATAATTGCGGGGCNAAAAGAATCCAATTCGGAGCGGACCGCGGA
ANCNGGGCTTGCAAAAACAGAAGANACCNNNACNAANNGAGCCANNNGGC
CAGCGGGGAGTTTTTTCCCCAGGACAAAGAACNAAAAAGGANCCAAAGAA
AGAAGAAAAGAGGGGGANGAAAGAAATTTTTGACTTGTTTATTCCAATCA
ATGAAAAAAACTGTATCATGAAGCTGAATGAAAGAGAGTCTGCTATAAAT
AGAACTGAATGCAGAATATTTTAAGGTCAGCAGATGGGGCTCTAAGAGGC
GAAAACTGCACAGAATTTTTTTTTTAAGACATAAGAACAGGGAACAAATT
CAAAGATTTATTTTCTACACCCAAAATCCAGAGATAAATTTTCACTTTGT
GGGTAAAGTCCAGACCAGGAAAAAAAAAGTTCCCTCAGGAGGGAATTAGA
GAATAAAGGGACTCTCAAAAAACAGCAGGGAGAACTGGGGTTTAGGGGAA
TAAAATACTAAGAACAGGAATTGGGTCCAAAAAAAAAAGGGCAGGCTAAG
GGAAAAAGGAGGAACTAGGGGAAAAAGGTACCCCGGAAACTGGGTTAAAG
GGCTCTAAGCTTGGAAAAAAAAACCCCTGGAAAGGCAAAAAAGGCCCGGG
GCTAAATTCCCCAAACTATGACAATTGGGGGGGAAAGGGAAATAAAAGAA
AGGGCAGTAGGGCCCCACCC
CACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAATGATCACATAATTCT
ATGAATAATTGGTAGGAATGTTGACAAACACACATGAACATAAACTGTGT
AGACTTTGGCAGTATATTATGAAAACAAGAATTTAGAATATACACTCATT
TCTTTCAGACCCCAAACTTCCTTTATATATGCATAACATTCTTTCTTTGT
TATATTTAAATATTTAGACATTAATAAAATGAAAATAACCTTTTGAATAT
CAAAGAAAACTAATAAAAACAATATTCACCCCAATATGTAAACCCTCAGA
ATAATTCAAATATAAAGAGGAGATAAAGTTGATATATCTTCCATTAATGA
ATGAATAAATGAAAGCAATGAATCCCTACTATTTCACACAAAAGCCTGGA
GCAGCAATAATTGCAGACCTATGGGGGATCATGTGTATAAAGAACCCAAA
CACTCAACTACACAAAATTGCACAAAAATTCTTTGGGGAAAAACAAAGGC
CAAATGCTAGGATATGAAGCAAATCCATCCCCAACACTGACTGTTTCTAG
CATCCCTAGTCAGGATGACAGACACAACTCAAAAATCCTTATAAATTTCA
AAATTCCTTGTGGAGAAGGGCTACTTTTTGATCTTAAGTCCAGGTTTGGG
AATAAAGCAGATGTTTTATTGATGGTGGGCACATGTGAGAATAATTAACT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_l15.g1 MSMg01no114_l15.g1 CHROMAT_FILE:
MSMg01no114_l15.g1 PHD_FILE: MSMg01no114_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:29 2005
         (544 letters)



>mm_chr3_158431514_158432457
          Length = 944

 Score = 1036 bits (536), Expect = 0.0
 Identities = 542/544 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atataatgatcacataattctatgaataattggtaggaatgttgacaaacacacatgaac 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atataatgatcacataattctatgaataattggtagtaatgttgacaaacacacatgaac 260

                                                                       
Query: 61  ataaactgtgtagactttggcagtatattatgaaaacaagaatttagaatatacactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaactgtgtagactttggcagtatattatgaaaacaagaatttagaatatacactcat 320

                                                                       
Query: 121 ttctttcagaccccaaacttcctttatatatgcataacattctttctttgttatatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttcagaccccaaacttcctttatatatgcataacattctttctttgttatatttaa 380

                                                                       
Query: 181 atatttagacattaataaaatgaaaataaccttttgaatatcaaagaaaactaataaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttagacattaataaaatgaaaataaccttttgaatatcaaagaaaactaataaaaa 440

                                                                       
Query: 241 caatattcaccccaatatgtaaaccctcagaataattcaaatataaagaggagataaagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 caatattcaccccaatatgtaaaccctcagaataattcaaatataaagtggagataaagt 500

                                                                       
Query: 301 tgatatatcttccattaatgaatgaataaatgaaagcaatgaatccctactatttcacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatatatcttccattaatgaatgaataaatgaaagcaatgaatccctactatttcacac 560

                                                                       
Query: 361 aaaagcctggagcagcaataattgcagacctatgggggatcatgtgtataaagaacccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaagcctggagcagcaataattgcagacctatgggggatcatgtgtataaagaacccaa 620

                                                                       
Query: 421 acactcaactacacaaaattgcacaaaaattctttggggaaaaacaaaggccaaatgcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acactcaactacacaaaattgcacaaaaattctttggggaaaaacaaaggccaaatgcta 680

                                                                       
Query: 481 ggatatgaagcaaatccatccccaacactgactgtttctagcatccctagtcaggatgac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatatgaagcaaatccatccccaacactgactgtttctagcatccctagtcaggatgac 740

               
Query: 541 agac 544
           ||||
Sbjct: 741 agac 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)