BAC Information

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BAC

Clone NameMSMg01-115F14
Chromosome3 (Build37)
Map Location 152,707,872 - 152,854,341
singlet/doubletdoublet
Overlap geneLOC100040750
Upstream geneLOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F14.T7 (MSMg01no115_f14.b1)MSMg01-115F14.TJ (MSMg01no115_f14.g1)
ACCAG327002AG327003
length758704
length of high quality
(start - end)
320 (40 - 359)345 (83 - 427)
definitionCHROMAT_FILE: MSMg01no115_f14.b1 PHD_FILE: MSMg01no115_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:16 2005CHROMAT_FILE: MSMg01no115_f14.g1 PHD_FILE: MSMg01no115_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,707,872 - 152,708,182)(152,853,997 - 152,854,341)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCCATCCACTGTGCTTTATCTGGGTTATCTCCCCGTGAGTCTGTAGGC
TGCTCCCTTCACTCTTAGCCTTCTCTCCTGTACCAGAGTGACCTACCTGT
GAACCAGAGCTGAGAGTCTATTCCACATCACAAGTGGGTCATGAGTGATC
TCCCATGGGGCTCAAGGTGTTGAAGAGTGACTGGTAAAGGATTCATGCTG
ATGCAAAAGAGTAGCTGGGAAGCCACGGGCCTTCCGGCTTCTTGAACCAC
TTCTAATTTAAGGTGGATTGCTGCTGAGCCCATCCAGTTTTATGAGCTGG
GGAGTCTGATTTTTTTCCAGGTCATGGCGAGCAGTTCATACCATGTGGTC
ACTTGTTGCCCCCCCCCCCCGTCTCCTTCACAAAGCCCTAGGCAAGACTG
CAAGCATATCTTTCCCAGTTAGTGCAGCTATTTCTGATCCTCTTTCCTGA
TAGCGATGGAAGAGAATTCATTTTGCAGATCCATAGCTGTACCGCCTACC
TGTGAGTTTGTGCTAATCTGCCCTGTCCTAGATAACGTATCTAGGACAGC
AGCTGCAGTCAAGGGCTCCTGCTTCTCAGATTTTCCCTAGTATAAAGGCC
GTTCTTCCGGATTCTTCTTGCTTCTTATCGCACGCCAAACCTTGCGTGCC
CAAGTCACGTTCATGACCTGGTCCCCACTTTTGCCTTGTTTACTCCTTCG
TTTCCCCG
TTTTTTTGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGATTTTAAAAATT
AATATGTTAGCAATGCTGTAACCAAAAAGGCATAAGTTACTGGACAGAAA
GGAAAAAATTGAAATTAGTTTAAAAAGCAGACTTCAAAACACACATATAC
ACACATATATAAGATTGTGTGTAAACTGGAAATGGCAAGATTGTGAAAGC
AGACAAAATAGCTATACATTATTTAGTGATATGTGATAATAAATAATGTT
TCTCTGACACTAACAATTCAGTAATCCATTTAATAAATATTTACTAAGAG
ATAGGTAAAAACGAAGTAAATGTAGCTTGACTATTTTTTAAAGTAACAAA
CCATAACATTTCAAATGAACACTGAAACCCACTGCAGGCTTGTCTATATC
ACAGCTGGAACAATGTAACGGGACGGAGAAAAGAAAACACAGGTAGCTTT
TCCATTCATACCCACACCACCTGCAGCTACAATGAAACTGAGAATTTCTT
TCTAGCTCACAGGATGGAAAATTATTCACAACTTGAGACAATAAAGTGAC
AACTTGGAGCTCCTGATGACAAGAAGTACAGATTTCTCTGTTACGAATGA
CCCACAGAAACATCTCTGACCTGGTTCATTATAAACGAAAAAGGTCTGTG
CTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f14.b1 MSMg01no115_f14.b1 CHROMAT_FILE:
MSMg01no115_f14.b1 PHD_FILE: MSMg01no115_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:16 2005
         (320 letters)



>mm_chr3_152707663_152708382
          Length = 720

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattccatccactgtgctttatctgggttatctccccgtgagtctgtaggctgctccct 69
           ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 210 gaattccatccacagtggtttatctgggttatctcccggtgagtctgtaggctgctccct 269

                                                                       
Query: 70  tcactcttagccttctctcctgtaccagagtgacctacctgtgaaccagagctgagagtc 129
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcactcttagccttctctcccgtaccagagtgacctacctgtgaaccagagctgagagtc 329

                                                                       
Query: 130 tattccacatcacaagtgggtcatgagtgatctcccatggggctcaaggtgttgaagagt 189
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 tattccacatcacaagtgggtcatgagtgatctcccatggggcccaaggtgttgaagagt 389

                                                                       
Query: 190 gactggtaaaggattcatgctgatgcaaaagagtagctgggaagccacgggccttccggc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gactggtaaaggattcatgctgatgcaaaagagtagctgggaagccacgggccttccggc 449

                                                                       
Query: 250 ttcttgaaccacttctaatttaaggtggattgctgctgagcccatccagttttatgagct 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcttgaaccacttctaatttaaggtggattgctgctgagcccatccagttttatgagct 509

                      
Query: 310 ggggagtctga 320
           |||||||||||
Sbjct: 510 ggggagtctga 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_f14.g1 MSMg01no115_f14.g1 CHROMAT_FILE:
MSMg01no115_f14.g1 PHD_FILE: MSMg01no115_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:16 2005
         (345 letters)



>mm_chr3_152853797_152854541
          Length = 745

 Score =  636 bits (329), Expect = 0.0
 Identities = 341/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagattttaaaaattaatatgttagcaatgctgtaaccaaaaaggcataagttactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cttcagattttaaaaattaatatgttagcaatgctgtaaccaaaaaggcataagttactg 486

                                                                       
Query: 61  gacagaaaggaaaaaattgaaattagtttaaaaagcagacttcaaaacacacatatacac 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 485 gacagaaaggaaaaaattgaaattagcttaaaaagcagacttcaaaacacacatatacac 426

                                                                       
Query: 121 acatatataagattgtgtgtaaactggaaatggcaagattgtgaaagcagacaaaatagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 425 acatatataagattgtgtgtaaactggaaatggcaagattgtgaaagcagacaaaatagt 366

                                                                       
Query: 181 tatacattatttagtgatatgtgataataaataatgtttctctgacactaacaattcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tatacattatttagtgatatgtgataataaataatgtttctctgacactaacaattcagt 306

                                                                       
Query: 241 aatccatttaataaatatttactaagagataggtaaaaacgaagtaaatgtagcttgact 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatccatttaacaaatatttactaagagataggtaaaaacgaagtaaatgtagcttgact 246

                                                        
Query: 301 attttttaaagtaacaaaccataacatttcaaatgaacactgaaa 345
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atttttaaaagtaacaaaccataacatttcaaatgaacactgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)