BAC Information

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BAC

Clone NameMSMg01-115J16
Chromosome3 (Build37)
Map Location 61,133,167 - 61,133,487
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853, P2ry1
Downstream geneRap2b, LOC666891, LOC669910, LOC676965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115J16.T7 (MSMg01no115_j16.b1)MSMg01-115J16.TJ (MSMg01no115_j16.g1)
ACCAG327192AG327193
length731717
length of high quality
(start - end)
240 (59 - 298)417 (78 - 494)
definitionCHROMAT_FILE: MSMg01no115_j16.b1 PHD_FILE: MSMg01no115_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:35 2005CHROMAT_FILE: MSMg01no115_j16.g1 PHD_FILE: MSMg01no115_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGAAACACATTTTCAAAACCACCGCGGAANTCTCACCTGTTGCA
ACCACCCGGCTGAGAAACACCTGAAAAATGTTCAGCATCCTTAATCATCG
GGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGA
ATGGCAAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAAC
CACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGAGATAGCACTA
CTGGTAGTANTTAGCAATACCTCTCCTGGGCATATATCCAGATTTTTTTT
TCTTGCCCCCCCAGGACACATACTCCACTATGTTCATAGCAGCCTTACCC
CCCATAGCCAGAAGCTGGAAAGAACCCCGATGCCCCTCAACAGAGGAATG
GATACAAAAAAAAATGTGGTACATTTACACAATGGGGTACTACTCAGCTA
TTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAG
GGCATTCATCCTGAGTGAGGTAACACAATTACAAAACAACTCCAATGAAA
TGTACCCCCTGAAAAGCGGATATTAGCCCCCAATCCCACCATTATTCTTT
TATTTTTTTACCACCTTGCCAAACCCTCGAACTTCCGTACGAAAGATCCC
ACGCGTGGACCTTTTTGCCCCCCTCCCCAAN
NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACACTTATTTCCACAGTAGTTG
CACCAGTTTGCACTTCCATCAGTAATGGATAAATGTCCCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCCCCGATG
GCTAAGGATGTGGACATCCTTGTACATCCTTGTTTGTTTGTATGTTTGTT
TGTCAAGACAGGGTTTCTCTGTATAACAGCCCTGGCTGTCTTGGAACTCT
TTGTAGGCTAGGCTGGACTCGAACTCATGGAGATCCCCCTGCCTCTGCCT
CCTGAGTGTTGGAATGTGGATTAAAATGCATTGCAAGTATTATTGCCTTT
TGTATTTCTTTTTTTTTAACAACTATCTATTTAAGAGTGAATGTGATCCT
CTGTAGGATGCTTGGAAGCCTACCAAGCCTGATAGTGACCTAGCGCATAC
TTCTGCCACCATTATGTCCAACTACCTGCCACCCCACCCTCCACCCCCAA
TATTTCTCTGTTCTTCAGGATCATGACAGACTACTCCAGGTCCAAAGATT
TACATTGTCAATTTGGTCGTTATGGTCCATTATTACATGCTTATGCTTCC
CTTGATGTCTACACTCAATCATTCATGAGGATTCATAAGTGTTCAGTTTG
AAGACGCTCGTATGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_j16.g1 MSMg01no115_j16.g1 CHROMAT_FILE:
MSMg01no115_j16.g1 PHD_FILE: MSMg01no115_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:35 2005
         (417 letters)



>mm_chr3_61132679_61133495
          Length = 817

 Score =  574 bits (297), Expect = e-168
 Identities = 315/321 (98%)
 Strand = Plus / Minus

                                                                       
Query: 97  tatatatatatatatatatccccgatggctaaggatgtggacatccttgtacatccttgt 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tatatatatatatatatatccccgatggctaaggatgtggacatccttgtacatccttgt 750

                                                                       
Query: 157 ttgtttgtatgtttgtttgtcaagacagggtttctctgtataacagccctggctgtcttg 216
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 749 ttgtttgtatgtttgtttgtcaagacacggtttctctgtataacagccctggctgtcttg 690

                                                                       
Query: 217 gaactctttgtaggctaggctggactcgaactcatggagatccccctgcctctgcctcct 276
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 689 gaactctttgtaggctaggctggactcgaactcatggagatccccatgcctctgcctcct 630

                                                                       
Query: 277 gagtgttggaatgtggattaaaatgcattgcaagtattattgccttttgtatttcttttt 336
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gagtgtcggaatgtggattaaaatgcattgcaagtattattgccttttgtatttcttttt 570

                                                                       
Query: 337 ttttaacaactatctatttaagagtgaatgtgatcctctgtaggatgcttggaagcctac 396
           |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 569 ttttaagaactatctatttaagagtgaatgtgatccactgtaggatgcttggaagcctgc 510

                                
Query: 397 caagcctgatagtgacctagc 417
           |||||||||||||||||||||
Sbjct: 509 caagcctgatagtgacctagc 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)