BAC Information

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BAC

Clone NameMSMg01-115L01
Chromosome3 (Build37)
Map Location 40,755,649 - 40,890,818
singlet/doubletdoublet
Overlap geneLarp2, Pgrmc2
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115L01.T7 (MSMg01no115_l01.b1)MSMg01-115L01.TJ (MSMg01no115_l01.g1)
ACCAG327258AG327259
length763723
length of high quality
(start - end)		367 (46 - 412)425 (84 - 508)
definitionCHROMAT_FILE: MSMg01no115_l01.b1 PHD_FILE: MSMg01no115_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:42 2005CHROMAT_FILE: MSMg01no115_l01.g1 PHD_FILE: MSMg01no115_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,755,649 - 40,756,012)(40,890,418 - 40,890,818)
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGATCCTCACGTCACTGTCTTCTTCAAGATACTGGGATTATAGA
CATTCTGCTCTCCTTATTAATTCTTACTAAATTTTGACACCTTAAGGAAA
AACAAAACAAAAGCACTGAGTTTTGCTCTCCATCTTGTATTAGCACAATT
CTGGCCTGCTGAAAAGAGCAGTTTACTACCATTGCTAAATAAGTGAAGAG
AACATGGTATATCAAGTCTTCTTAAAATTTAGTAGAAAAACCTGTTGATC
ACTCTGTTACCCCTCCATATCTATATTTACACAGAGTATTAGGCATTATA
ATATTTATTGAACTACGAAATATTAACCGAGTTTTTTGTGTGTTTGTTTT
TGTTTTGTTTGTTTCGCCCCCCCCTTTTCTCCCCCTTCCCCCCCCCCCCC
CCTCTCTCCCCCTTCTCCCCCTTTCCCCCCTCTTCCTCCCCCCCCCCCTT
CTCCCTCTCTTCTTCCCTTTCCCCTCTCCTCCCTTCCTCTTTTTTCCCCC
TTTTCTCTCTCCCCCCCCCCCCCCCCCTCCCTTCTCCCTTTCTTCTTCTT
TTTTTTCCCCCTCCCCCCTTCCTTCTTTTTCCTCCTCCCTTCTCCTCTCT
TCCCCCCNCCCCCCTCCCCTTTCTTTCCCCCCCCCCTCTCCCCTCCCTCC
TCCTCCCTCCCTCCTTCCCCCCTTTTTTCCCCCTTCCTTCCCCTCCCTCC
TTCCCCCCCCCTN

ACCATCCCACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAAACAGATTCTCA
GATTTATCTAAGAAATCTTTATTAAGTATTGTGGTGAAAATATGAGAGCA
GAGTGCTGCCTACTACCCAGCCATGGTAATGCCTAATACATCATGTATGT
CAGCGCCTTGTATTTTAGACTGTTATATCAATGCCCTATTTCTGTTACCA
GTCTTTGATCAGTCCAGCAAAGTAATTAGCGCGACCTCAGCTATCTGTGA
GTTGAAATAGTAGAGATGTATTTCTCATTTGTGTGGTGCCATGTGTTAGC
TAGCAGCTCTTTTCTGCCTCATCCTCACTCTAGGACTCTGAATGATGGAA
ATCAGCCATCATTTGAAACAGAATTGCCCACCACCACATCCCCTTCTTCA
TTGATACTTGCTTTCCCCTTATTTTACAATTCAGCTAGACCTATGGCTAC
TTTCACCAATGGAAATGTGTCGTTTCCCACTTTATACTCACAATGACCTA
GAAGGTTTTGCCACTTTTGTTTTTCCAACCCTGCACAGGCTTATCCTTCT
AGAGTAGTCTTGTGATGAACTTTCTTCTCCCCATTACCTGATGCCCCTTT
GATTTGCCCTTTCTCTCCCCGTAATCACTTTCCCACTTGTCTGCCTGTTT
TTTATTTCCCGATTTTTTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_l01.b1 MSMg01no115_l01.b1 CHROMAT_FILE:
MSMg01no115_l01.b1 PHD_FILE: MSMg01no115_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
         (367 letters)



>mm_chr3_40755446_40756212
          Length = 767

 Score =  650 bits (336), Expect = 0.0
 Identities = 357/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgatcctcacgtcactgtcttcttcaagatactgggattatagacattctgc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgatcctcacgtcactgtcttcttcaagatactgggattatagacattctgc 263

                                                                       
Query: 64  tctccttattaattcttactaaattttgacaccttaaggaaaaacaaaacaaaagcactg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctccttattaattcttactaaattttgacaccttaaggaaaaacaaaacaaaagcactg 323

                                                                       
Query: 124 agttttgctctccatcttgtattagcacaattctggcctgctgaaaagagcagtttacta 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 agttttgctctccatcttgtattagtacaattctggcctgctgaaaagagcagtttacta 383

                                                                       
Query: 184 ccattgctaaataagtgaagagaacatggtatatcaagtcttcttaaaatttagtagaaa 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 384 ccattgctaaataagtgaagagaacatggtatatcaagtcttcttaaaatttcgtagaga 443

                                                                       
Query: 244 aacctgttgatcactctgttacccctccatatctatatttacacagagtattaggcatta 303
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 444 aacctgttgatcactctgttacccctccatatctagatttacacagagtactaggcatta 503

                                                                       
Query: 304 taatatttattgaactacgaaatattaaccgagttttttgtgtgtttgtttttgttttgt 363
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 taatatttattgaactatgaaatattaatcgagttttttgtgtgtttgtttttgttttgt 563

               
Query: 364 ttgt 367
           ||||
Sbjct: 564 ttgt 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_l01.g1 MSMg01no115_l01.g1 CHROMAT_FILE:
MSMg01no115_l01.g1 PHD_FILE: MSMg01no115_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:42 2005
         (425 letters)



>mm_chr3_40890418_40891242
          Length = 825

 Score =  752 bits (389), Expect = 0.0
 Identities = 398/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaaacagattctcagatttatctaagaaatctttattaagtattgtggtgaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caagaaacagattctcagatttatctaagaaatctttattaagtattgtggtgaaaatat 342

                                                                       
Query: 61  gagagcagagtgctgcctactacccagccatggtaatgcctaatacatcatgtatgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gagagcagagtgctgcctactacccagccatggtaatgcctaatacatcatgtatgtcag 282

                                                                       
Query: 121 cgccttgtattttagactgttatatcaatgccctatttctgttaccagtctttgatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cgccttgtattttagactgttatatcaatgccctatttctgttaccagtctttgatcagt 222

                                                                       
Query: 181 ccagcaaagtaattagcgcgacctcagctatctgtgagttgaaatagtagagatgtattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ccagcaaagtaattagcgcgacctcagctatctgtgagttgaaatagtagagatgtattt 162

                                                                       
Query: 241 ctcatttgtgtggtgccatgtgttagctagcagctcttttctgcctcatcctcactctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ctcatttgtgtggtgccatgtgttagctagcagctcttttctgcctcatcctcactctag 102

                                                                       
Query: 301 gactctgaatgatggaaatcagccatcatttgaaacagaattgcccaccaccacatcccc 360
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 101 gactctgaatgatggaaatcagccatcatttgaaacagaattggggaccaccacatcccc 42

                                                    
Query: 361 ttcttcattgatacttgctttccccttattttacaattcag 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ttcttcattgatacttgctttccccttattttacaattcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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